HL_6W6L_048

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

6W6L|1|t|C|2688

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_048 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.2713

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6W6L|1|t|G|2684
6W6L|1|t|G|2685
6W6L|1|t|U|2686
6W6L|1|t|U|2687
6W6L|1|t|C|2688
6W6L|1|t|C|2689

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain 1

Protein transport protein Sec61 subunit alpha isoform 1

Chain S

60S ribosomal protein L19

Chain Y

60S ribosomal protein L23a