HL_6W6L_060

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6W6L|1|t|A|3847, 6W6L|1|t|A|3848, 6W6L|1|t|C|3849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_060 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0925

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6W6L|1|t|G|3844
6W6L|1|t|G|3845
6W6L|1|t|G|3846
6W6L|1|t|A|3847
6W6L|1|t|A|3848
6W6L|1|t|C|3849
6W6L|1|t|G|3850
6W6L|1|t|G|3851
6W6L|1|t|G|3852
6W6L|1|t|C|3853

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain f

60S ribosomal protein L32