HL_6W6L_063

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6W6L|1|t|G|4157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_063 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1053

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6W6L|1|t|C|4155
6W6L|1|t|U|4156
6W6L|1|t|G|4157
6W6L|1|t|G|4158
6W6L|1|t|G|4159
6W6L|1|t|G|4160
6W6L|1|t|C|4161
6W6L|1|t|G|4162
6W6L|1|t|G|4163

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain c

60S ribosomal protein L29

Chain u

Transfer RNA; tRNA