HL_6W6L_076

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6W6L|1|t|G|4656, 6W6L|1|t|C|4660

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_076 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1285

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6W6L|1|t|C|4650
6W6L|1|t|U|4651
6W6L|1|t|G|4652
6W6L|1|t|A|4653
6W6L|1|t|A|4654
6W6L|1|t|C|4655
6W6L|1|t|G|4656
6W6L|1|t|C|4657
6W6L|1|t|C|4658
6W6L|1|t|U|4659
6W6L|1|t|C|4660
6W6L|1|t|U|4661
6W6L|1|t|A|4662
6W6L|1|t|A|4663
6W6L|1|t|G|4664

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain J

60S ribosomal protein L9

Chain P

60S ribosomal protein L13a