HL_6W6L_078

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GAAACCUCGC

Length

10 nucleotides

Bulged bases

6W6L|1|t|A|4852, 6W6L|1|t|C|4884, 6W6L|1|t|G|4885

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_078 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1839

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6W6L|1|t|G|4849
6W6L|1|t|A|4850
6W6L|1|t|A|4851
6W6L|1|t|A|4852
6W6L|1|t|C|4853
6W6L|1|t|C|4882
6W6L|1|t|U|4883
6W6L|1|t|C|4884
6W6L|1|t|G|4885
6W6L|1|t|C|4886

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L14

Chain P

60S ribosomal protein L13a