HL_6W6L_079

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6W6L|1|t|U|4934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_079 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.1261

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

6W6L|1|t|G|4933
6W6L|1|t|U|4934
6W6L|1|t|A|4935
6W6L|1|t|G|4936
6W6L|1|t|A|4937
6W6L|1|t|C|4938
6W6L|1|t|G|4939
6W6L|1|t|A|4940
6W6L|1|t|C|4941

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain Q

60S ribosomal protein L17