HL_6W6P_039

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6W6P|1|A|A|1657, 6W6P|1|A|A|1659, 6W6P|1|A|A|1661

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6P_039 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.0827

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6W6P|1|A|C|1655
6W6P|1|A|G|1656
6W6P|1|A|A|1657
6W6P|1|A|C|1658
6W6P|1|A|A|1659
6W6P|1|A|C|1660
6W6P|1|A|A|1661
6W6P|1|A|G|1662

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain T

50S ribosomal protein L22