6W6P Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6W6P_001 | 1/A/68:75 | No text annotation | geometric HL_4P5J_004 HL_08550.2 | |
| HL_6W6P_002 | 1/A/88:96 | Pseudoknot geometry | homologous HL_4WF9_002 HL_00911.3 | |
| HL_6W6P_003 | 1/A/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_6W6P_004 | 1/A/137:144 | GNRA with tandem sheared | homologous HL_4WF9_004 HL_98423.4 | |
| HL_6W6P_005 | 1/A/160:170 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_6W6P_006 | 1/A/197:204 | No text annotation | geometric HL_5J7L_139 NA | |
| HL_6W6P_007 | 1/A/228:233 | No text annotation | homologous HL_7A0S_007 HL_91813.1 | |
| HL_6W6P_008 | 1/A/249:255 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_6W6P_010 | 1/A/342:349 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_142 NA | |
| HL_6W6P_011 | 1/A/356:360 | No text annotation | homologous HL_4WF9_011 HL_75660.9 | |
| HL_6W6P_012 | 1/A/364:372 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_6W6P_013 | 1/A/422:432 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_6W6P_014 | 1/A/450:457 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.5 | |
| HL_6W6P_015 | 1/A/502:507 | GNRA | homologous HL_4WF9_015 HL_34789.5 | |
| HL_6W6P_016 | 1/A/527:532 | GNRA | homologous HL_7RQB_016 NA | |
| HL_6W6P_017 | 1/A/581:588 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
| HL_6W6P_018 | 1/A/603:612 | T-loop with 2 stacked bulged bases | geometric HL_4WF9_018 HL_33597.4 | |
| HL_6W6P_019 | 1/A/649:655 | No text annotation | geometric HL_4WF9_003 HL_75660.9 | |
| HL_6W6P_020 | 1/A/668:673 | GNRA | homologous HL_7RQB_020 NA | |
| HL_6W6P_021 | 1/A/680:686 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_6W6P_022 | 1/A/752:759 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_6W6P_023 | 1/A/784:793 | No text annotation | homologous HL_7A0S_022 HL_50204.2 | |
| HL_6W6P_024 | 1/A/819:825 | No text annotation | homologous HL_4WF9_024 HL_79773.1 | |
| HL_6W6P_025 | 1/A/866:871 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_6W6P_027 | 1/A/995:1002 | GNRA | homologous HL_7RQB_027 NA | |
| HL_6W6P_028 | 1/A/1018:1025 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_6W6P_030 | 1/A/1209:1218 | No text annotation | ||
| HL_6W6P_031 | 1/A/1259:1264 | GNRA | homologous HL_4WF9_031 HL_34789.5 | |
| HL_6W6P_032 | 1/A/1317:1325 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_33597.4 | |
| HL_6W6P_033 | 1/A/1360:1366 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_49081.1 | |
| HL_6W6P_034 | 1/A/1399:1404 | GNRA | homologous HL_4WF9_034 HL_34789.5 | |
| HL_6W6P_035 | 1/A/1425:1434 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_6W6P_036 | 1/A/1534:1540 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_6W6P_038 | 1/A/1611:1614 | Mini UNCG | homologous HL_5J7L_172 NA | |
| HL_6W6P_039 | 1/A/1655:1662 | No text annotation | homologous HL_4WF9_038 HL_28592.3 | |
| HL_6W6P_040 | 1/A/1673:1679 | GNRA | homologous HL_5J7L_174 NA | |
| HL_6W6P_041 | 1/A/1734:1739 | UNCG | geometric HL_4LFB_009 HL_61337.5 | |
| HL_6W6P_042 | 1/A/1755:1760 | No text annotation | homologous HL_7A0S_043 NA | |
| HL_6W6P_043 | 1/A/1766:1770 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_6W6P_044 | 1/A/1791:1801 | No text annotation | homologous HL_4WF9_043 HL_87681.2 | |
| HL_6W6P_045 | 1/A/1820:1825 | GNRA | homologous HL_7RQB_046 NA | |
| HL_6W6P_046 | 1/A/1882:1887 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_6W6P_047 | 1/A/1924:1934 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_6W6P_048 | 1/A/1963:1971 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_6W6P_049 | 1/A/2041:2050 | No text annotation | homologous HL_4WF9_047 HL_78372.2 | |
| HL_6W6P_051 | 1/A/2223:2229 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_6W6P_052 | 1/A/2262:2270 | LSU P loop | homologous HL_7A0S_052 HL_11974.3 | |
| HL_6W6P_053 | 1/A/2278:2290 | No text annotation | homologous HL_4WF9_050 HL_02042.2 | |
| HL_6W6P_104 | 1/A/2318:2326 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_6W6P_055 | 1/A/2338:2345 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_6W6P_056 | 1/A/2369:2376 | GNRA with extra cWW | homologous HL_4WF9_053 HL_87268.3 | |
| HL_6W6P_057 | 1/A/2388:2393 | GNRA | homologous HL_7RQB_058 NA | |
| HL_6W6P_058 | 1/A/2418:2427 | No text annotation | homologous HL_4WF9_055 HL_51853.2 | |
| HL_6W6P_059 | 1/A/2485:2493 | No text annotation | homologous HL_4WF9_056 HL_52011.2 | |
| HL_6W6P_060 | 1/A/2542:2549 | GNRA variation | homologous HL_4WF9_057 HL_46665.3 | |
| HL_6W6P_061 | 1/A/2565:2571 | LSU A loop | homologous HL_4WF9_058 HL_48677.2 | |
| HL_6W6P_062 | 1/A/2608:2613 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6W6P_063 | 1/A/2672:2677 | GNRA | geometric HL_4V9F_066 HL_34789.5 | |
| HL_6W6P_064 | 1/A/2715:2720 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.3 | |
| HL_6W6P_065 | 1/A/2759:2773 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_6W6P_066 | 1/A/2809:2812 | No text annotation | ||
| HL_6W6P_067 | 1/A/2830:2838 | No text annotation | homologous HL_4WF9_064 HL_37889.2 | |
| HL_6W6P_068 | 1/A/2867:2872 | GNRA | homologous HL_7A0S_068 HL_34789.5 | |
| HL_6W6P_105 | 1/B/32:46 | No text annotation | homologous HL_9DFE_067 HL_97756.4 | |
| HL_6W6P_069 | 1/B/36:42 | No text annotation | homologous HL_4V9F_071 HL_59381.3 | |
| HL_6W6P_070 | 1/B/84:88 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_6W6P_071 | 1/a/9:19 | No text annotation | homologous HL_4LFB_001 HL_73535.2 | |
| HL_6W6P_073 | 1/a/164:169 | GNRA | homologous HL_5J7L_003 NA | |
| HL_6W6P_074 | 1/a/199:204 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_6W6P_075 | 1/a/224:229 | Mini UNCG | homologous HL_4LFB_005 HL_90436.4 | |
| HL_6W6P_076 | 1/a/274:282 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_6W6P_077 | 1/a/311:316 | GNRA | homologous HL_5J7L_007 NA | |
| HL_6W6P_078 | 1/a/335:348 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_6W6P_079 | 1/a/357:362 | UNCG | homologous HL_5J7L_009 NA | |
| HL_6W6P_080 | 1/a/394:399 | GNRA | homologous HL_4LFB_010 HL_34789.5 | |
| HL_6W6P_081 | 1/a/434:439 | UNCG | homologous HL_5J7L_011 NA | |
| HL_6W6P_082 | 1/a/477:486 | No text annotation | geometric HL_4TUE_219 NA | |
| HL_6W6P_083 | 1/a/537:542 | No text annotation | geometric HL_1WZ2_007 HL_75660.9 | |
| HL_6W6P_084 | 1/a/632:638 | GNRA-like with tWH | homologous HL_4LFB_014 HL_86621.1 | |
| HL_6W6P_085 | 1/a/704:713 | No text annotation | homologous HL_4LFB_015 HL_38491.3 | |
| HL_6W6P_086 | 1/a/741:746 | GNRA | homologous HL_5J7L_016 NA | |
| HL_6W6P_087 | 1/a/801:811 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_6W6P_088 | 1/a/855:862 | No text annotation | geometric HL_4WF9_011 HL_75660.9 | |
| HL_6W6P_089 | 1/a/878:883 | GNRA | homologous HL_4LFB_019 HL_34789.5 | |
| HL_6W6P_090 | 1/a/913:918 | GNRA | homologous HL_4LFB_020 HL_34789.5 | |
| HL_6W6P_091 | 1/a/979:988 | No text annotation | homologous HL_4LFB_021 HL_97521.2 | |
| HL_6W6P_092 | 1/a/1028:1033 | GNRA | homologous HL_4LFB_022 HL_34789.5 | |
| HL_6W6P_093 | 1/a/1045:1050 | No text annotation | geometric HL_6U8D_003 HL_32346.6 | |
| HL_6W6P_094 | 1/a/1092:1097 | GNRA | homologous HL_4LFB_024 HL_34789.5 | |
| HL_6W6P_095 | 1/a/1105:1112 | T-loop related | homologous HL_4LFB_025 HL_63894.3 | |
| HL_6W6P_096 | 1/a/1148:1157 | No text annotation | ||
| HL_6W6P_097 | 1/a/1180:1186 | GNRA | homologous HL_5J7L_026 NA | |
| HL_6W6P_098 | 1/a/1280:1285 | GNRA | homologous HL_5J7L_027 NA | |
| HL_6W6P_099 | 1/a/1329:1338 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_6W6P_100 | 1/a/1371:1381 | No text annotation | homologous HL_4LFB_030 HL_86432.2 | |
| HL_6W6P_101 | 1/a/1464:1470 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_6W6P_102 | 1/a/1531:1536 | GNRA variation | geometric HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6W6P_103 | No text annotation | ||
| HL_6W6P_009 | No text annotation | ||
| HL_6W6P_026 | No text annotation | ||
| HL_6W6P_029 | No text annotation | ||
| HL_6W6P_037 | No text annotation | ||
| HL_6W6P_050 | No text annotation | ||
| HL_6W6P_054 | No text annotation | ||
| HL_6W6P_072 | Externally structured |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6W6P_001 | 1/A/25:31, 1/A/549:555 | Triple sheared with non-canonical cWW | geometric IL_4WF9_001 IL_22311.2 | |
| IL_6W6P_002 | 1/A/37:38, 1/A/482:484 | Single bulged A | homologous IL_7A0S_002 IL_14190.3 | |
| IL_6W6P_003 | 1/A/44:45, 1/A/474:476 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_6W6P_169 | 1/A/57:77, 1/A/110:114 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_6W6P_004 | 1/A/82:86, 1/A/98:105 | Kink-turn | homologous IL_4WF9_004 IL_71972.2 | |
| IL_6W6P_005 | 1/A/153:156, 1/A/174:177 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_6W6P_006 | 1/A/186:187, 1/A/215:217 | Single stack bend | homologous IL_4WF9_007 IL_15011.4 | |
| IL_6W6P_007 | 1/A/190:197, 1/A/204:212 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_4WF9_008 IL_93502.2 | |
| IL_6W6P_008 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_62167.4 | |
| IL_6W6P_009 | 1/A/305:306, 1/A/403:406 | Major groove minor groove platform; mini C-loop | geometric IL_1S03_007 IL_73108.3 | |
| IL_6W6P_010 | 1/A/309:315, 1/A/397:400 | No text annotation | ||
| IL_6W6P_011 | 1/A/317:319, 1/A/394:395 | Single bulged A | geometric IL_1JZV_002 IL_14190.3 | |
| IL_6W6P_012 | 1/A/320:322, 1/A/392:393 | Single bulged C | geometric IL_1S03_002 IL_05642.4 | |
| IL_6W6P_013 | 1/A/330:332, 1/A/380:384 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_6W6P_014 | 1/A/340:342, 1/A/349:351 | Isolated non-canonical cWW pair | geometric IL_2O3V_004 IL_71625.4 | |
| IL_6W6P_015 | 1/A/521:524, 1/A/535:548 | No text annotation | homologous IL_4WF9_015 IL_44923.2 | |
| IL_6W6P_016 | 1/A/575:578, 1/A/591:594 | Double sheared | homologous IL_4WF9_016 IL_58355.3 | |
| IL_6W6P_017 | 1/A/601:603, 1/A/612:614 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_71625.4 | |
| IL_6W6P_018 | 1/A/643:647, 1/A/657:661 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.3 | |
| IL_6W6P_019 | 1/A/712:714, 1/A/846:848 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_01003.5 | |
| IL_6W6P_020 | 1/A/714:718, 1/A/839:846 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_73855.2 | |
| IL_6W6P_021 | 1/A/720:722, 1/A/835:837 | Isolated non-canonical cWW pair | geometric IL_5MWI_002 IL_01003.5 | |
| IL_6W6P_022 | 1/A/737:738, 1/A/803:805 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_6W6P_023 | 1/A/742:743, 1/A/768:770 | Single bulged G | geometric IL_5J7L_262 NA | |
| IL_6W6P_024 | 1/A/743:747, 1/A/764:768 | Triple sheared | homologous IL_4WF9_024 IL_15190.3 | |
| IL_6W6P_025 | 1/A/778:780, 1/A/797:798 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_6W6P_026 | 1/A/815:817, 1/A/827:831 | Multiple bulged bases | homologous IL_5J7L_265 NA | |
| IL_6W6P_027 | 1/A/877:878, 1/A/980:982 | Single stack bend | homologous IL_7A0S_022 IL_15011.4 | |
| IL_6W6P_028 | 1/A/883:888, 1/A/973:975 | No text annotation | ||
| IL_6W6P_177 | 1/A/883:889, 1/A/971:975 | No text annotation | ||
| IL_6W6P_029 | 1/A/888:889, 1/A/971:973 | 90 degree turn | geometric IL_7A0S_024 IL_79144.1 | |
| IL_6W6P_030 | 1/A/893:894, 1/A/965:967 | Single bulged U | homologous IL_4WF9_030 IL_97561.6 | |
| IL_6W6P_031 | 1/A/897:904, 1/A/954:962 | No text annotation | ||
| IL_6W6P_032 | 1/A/905:909, 1/A/950:953 | C-loop | homologous IL_4WF9_033 IL_16301.2 | |
| IL_6W6P_033 | 1/A/992:994, 1/A/1003:1005 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_6W6P_034 | 1/A/1034:1036, 1/A/1199:1200 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6W6P_035 | 1/A/1038:1042, 1/A/1193:1197 | UAA/GAN | homologous IL_4WF9_036 IL_08938.2 | |
| IL_6W6P_036 | 1/A/1044:1051, 1/A/1190:1191 | SSU/LSU pseudoknot | geometric IL_5J7L_278 NA | |
| IL_6W6P_037 | 1/A/1051:1053, 1/A/1189:1190 | Single bulged U | homologous IL_5J7L_279 NA | |
| IL_6W6P_038 | 1/A/1058:1064, 1/A/1180:1184 | Kink-turn related | geometric IL_5J7L_280 NA | |
| IL_6W6P_039 | 1/A/1064:1070, 1/A/1164:1180 | No text annotation | geometric IL_4WF9_040 IL_50715.4 | |
| IL_6W6P_040 | 1/A/1071:1074, 1/A/1161:1163 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_6W6P_041 | 1/A/1083:1091, 1/A/1148:1152 | Kink-turn | geometric IL_5TBW_054 NA | |
| IL_6W6P_042 | 1/A/1234:1236, 1/A/1284:1287 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.6 | |
| IL_6W6P_043 | 1/A/1242:1244, 1/A/1276:1278 | Isolated cWH basepair | homologous IL_4WF9_045 IL_10892.3 | |
| IL_6W6P_044 | 1/A/1245:1252, 1/A/1271:1275 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6W6P_045 | 1/A/1256:1258, 1/A/1265:1267 | Intercalated cWW | homologous IL_4WF9_047 IL_53541.1 | |
| IL_6W6P_046 | 1/A/1299:1306, 1/A/2025:2031 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_048 IL_62167.4 | |
| IL_6W6P_047 | 1/A/1346:1349, 1/A/1646:1647 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_6W6P_048 | 1/A/1355:1359, 1/A/1367:1369 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_06671.2 | |
| IL_6W6P_049 | 1/A/1387:1391, 1/A/1412:1416 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_6W6P_050 | 1/A/1393:1397, 1/A/1406:1410 | tSH-tWH-tHS | homologous IL_5J7L_293 NA | |
| IL_6W6P_051 | 1/A/1459:1463, 1/A/1623:1626 | Other IL | homologous IL_4WF9_054 IL_74317.1 | |
| IL_6W6P_052 | 1/A/1474:1477, 1/A/1603:1607 | No text annotation | ||
| IL_6W6P_053 | 1/A/1479:1482, 1/A/1597:1601 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_6W6P_054 | 1/A/1511:1514, 1/A/1564:1568 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_6W6P_055 | 1/A/1518:1521, 1/A/1557:1560 | Double sheared | geometric IL_4LFB_060 IL_58355.3 | |
| IL_6W6P_056 | 1/A/1524:1526, 1/A/1548:1554 | No text annotation | ||
| IL_6W6P_057 | 1/A/1694:1699, 1/A/2018:2020 | No text annotation | homologous IL_4WF9_062 IL_12566.5 | |
| IL_6W6P_058 | 1/A/1706:1708, 1/A/2009:2011 | Isolated tWW turn | homologous IL_7A0S_060 IL_10432.2 | |
| IL_6W6P_059 | 1/A/1709:1712, 1/A/2007:2008 | Major groove platform; stack outside cWW | geometric IL_4WF9_064 IL_74641.3 | |
| IL_6W6P_173 | 1/A/1709:1717, 1/A/2004:2008 | No text annotation | homologous IL_4WF9_117 IL_80252.2 | |
| IL_6W6P_060 | 1/A/1712:1717, 1/A/2004:2007 | Intercalated tWH | homologous IL_4WF9_065 IL_28217.2 | |
| IL_6W6P_061 | 1/A/1729:1734, 1/A/1739:1745 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_6W6P_062 | 1/A/1784:1785, 1/A/1994:1996 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_6W6P_063 | 1/A/1812:1818, 1/A/1827:1835 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_6W6P_064 | 1/A/1851:1854, 1/A/1916:1917 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_6W6P_065 | 1/A/1855:1856, 1/A/1912:1915 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_6W6P_066 | 1/A/1860:1863, 1/A/1907:1908 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_6W6P_067 | 1/A/1865:1869, 1/A/1901:1905 | UAA/GAN with extra stack | homologous IL_7A0S_069 IL_89021.4 | |
| IL_6W6P_068 | 1/A/1870:1874, 1/A/1896:1900 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_6W6P_069 | 1/A/1878:1881, 1/A/1888:1892 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_6W6P_070 | 1/A/1947:1948, 1/A/1978:1981 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_6W6P_071 | 1/A/1948:1959, 1/A/1975:1978 | No text annotation | homologous IL_4WF9_077 IL_84014.2 | |
| IL_6W6P_072 | 1/A/2064:2066, 1/A/2631:2632 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_6W6P_073 | 1/A/2068:2070, 1/A/2626:2629 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_6W6P_074 | 1/A/2081:2083, 1/A/2456:2457 | Single bulged U | homologous IL_4WF9_080 IL_97561.6 | |
| IL_6W6P_075 | 1/A/2084:2085, 1/A/2452:2455 | Minor groove platform | homologous IL_7A0S_076 IL_34520.4 | |
| IL_6W6P_076 | 1/A/2095:2097, 1/A/2250:2253 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_6W6P_077 | 1/A/2109:2111, 1/A/2206:2208 | Isolated non-canonical cWW pair | geometric IL_4WF9_083 IL_01003.5 | |
| IL_6W6P_078 | 1/A/2216:2218, 1/A/2234:2235 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_6W6P_079 | 1/A/2311:2313, 1/A/2331:2335 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_6W6P_080 | 1/A/2364:2367, 1/A/2378:2381 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_6W6P_081 | 1/A/2415:2417, 1/A/2428:2429 | Single bulged U | geometric IL_6UFG_004 IL_97561.6 | |
| IL_6W6P_082 | 1/A/2468:2469, 1/A/2510:2512 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_6W6P_083 | 1/A/2471:2473, 1/A/2507:2508 | Major groove platform | homologous IL_4WF9_091 IL_48076.9 | |
| IL_6W6P_084 | 1/A/2473:2475, 1/A/2503:2507 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_6W6P_085 | 1/A/2480:2484, 1/A/2494:2498 | Double sheared with non-canonical cWW | homologous IL_4WF9_093 IL_87767.3 | |
| IL_6W6P_086 | 1/A/2521:2522, 1/A/2594:2596 | Major groove platform | homologous IL_4WF9_094 IL_46637.3 | |
| IL_6W6P_087 | 1/A/2524:2526, 1/A/2588:2592 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_6W6P_088 | 1/A/2526:2527, 1/A/2585:2588 | No text annotation | homologous IL_4WF9_096 IL_44609.3 | |
| IL_6W6P_089 | 1/A/2536:2537, 1/A/2554:2557 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_6W6P_090 | 1/A/2605:2606, 1/A/2615:2617 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_6W6P_091 | 1/A/2650:2654, 1/A/2788:2796 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.4 | |
| IL_6W6P_092 | 1/A/2666:2672, 1/A/2677:2682 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.6 | |
| IL_6W6P_093 | 1/A/2694:2698, 1/A/2739:2741 | C-loop | homologous IL_7RQB_104 NA | |
| IL_6W6P_094 | 1/A/2701:2705, 1/A/2732:2736 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
| IL_6W6P_095 | 1/A/2709:2710, 1/A/2725:2728 | Multiple bulged bases | homologous IL_4WF9_103 IL_44609.3 | |
| IL_6W6P_096 | 1/A/2751:2756, 1/A/2776:2781 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_6W6P_097 | 1/A/2806:2809, 1/A/2812:2815 | Isolated non-canonical cWW pair | geometric IL_2QEK_001 NA | |
| IL_6W6P_098 | 1/A/2849:2850, 1/A/2889:2891 | Major groove intercalation | homologous IL_5J7L_352 NA | |
| IL_6W6P_099 | 1/A/2854:2857, 1/A/2881:2885 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_6W6P_100 | 1/A/2858:2863, 1/A/2876:2880 | tHS double platform | homologous IL_4WF9_108 IL_48489.2 | |
| IL_6W6P_101 | 1/B/15:16, 1/B/63:65 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.3 | |
| IL_6W6P_102 | 1/B/21:27, 1/B/53:58 | No text annotation | geometric IL_9E6Q_106 IL_41504.1 | |
| IL_6W6P_103 | 1/B/28:29, 1/B/49:52 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.3 | |
| IL_6W6P_104 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform | geometric IL_5TBW_376 NA | |
| IL_6W6P_174 | 1/B/69:78, 1/B/94:103 | No text annotation | ||
| IL_6W6P_105 | 1/a/26:29, 1/a/567:569 | Isolated non-canonical cWW pair | geometric IL_7A0S_026 IL_01003.5 | |
| IL_6W6P_106 | 1/a/41:42, 1/a/411:413 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_6W6P_107 | 1/a/44:49, 1/a/374:376 | No text annotation | geometric IL_5J7L_003 NA | |
| IL_6W6P_108 | 1/a/51:53, 1/a/371:372 | Minor groove platform | homologous IL_4LFB_004 IL_34520.4 | |
| IL_6W6P_109 | 1/a/60:63, 1/a/108:109 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_6W6P_110 | 1/a/64:66, 1/a/105:107 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.5 | |
| IL_6W6P_111 | 1/a/134:137, 1/a/246:247 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.2 | |
| IL_6W6P_112 | 1/a/138:142, 1/a/242:245 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_6W6P_113 | 1/a/150:152, 1/a/182:184 | Isolated cWH basepair | homologous IL_5J7L_011 NA | |
| IL_6W6P_114 | 1/a/153:159, 1/a/174:181 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_6W6P_115 | 1/a/257:262, 1/a/292:299 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_6W6P_116 | 1/a/264:267, 1/a/289:290 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_6W6P_117 | 1/a/307:308, 1/a/319:323 | C-loop | homologous IL_6CZR_125 NA | |
| IL_6W6P_118 | 1/a/382:384, 1/a/407:408 | Single bulged U | geometric IL_5J7L_017 NA | |
| IL_6W6P_119 | 1/a/386:390, 1/a/404:405 | C-loop | homologous IL_5J7L_018 NA | |
| IL_6W6P_120 | 1/a/390:391, 1/a/402:404 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_6W6P_121 | 1/a/424:431, 1/a/442:448 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_6W6P_122 | 1/a/461:465, 1/a/498:503 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_82100.1 | |
| IL_6W6P_123 | 1/a/465:471, 1/a/492:498 | No text annotation | ||
| IL_6W6P_124 | 1/a/519:526, 1/a/555:556 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.2 | |
| IL_6W6P_125 | 1/a/530:536, 1/a/543:551 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_6W6P_126 | 1/a/584:590, 1/a/896:897 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_6W6P_127 | 1/a/595:599, 1/a/772:776 | tSH-tWH-tHS | homologous IL_5J7L_027 NA | |
| IL_6W6P_128 | 1/a/609:611, 1/a/659:660 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_6W6P_129 | 1/a/612:613, 1/a/655:658 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_6W6P_130 | 1/a/619:620, 1/a/647:649 | Single bulged U | geometric IL_4C7O_001 IL_97561.6 | |
| IL_6W6P_131 | 1/a/620:627, 1/a/643:647 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_6W6P_132 | 1/a/669:670, 1/a/766:769 | Major groove platform; stack outside cWW | geometric IL_4LFB_027 IL_74641.3 | |
| IL_6W6P_133 | 1/a/671:673, 1/a/762:765 | No text annotation | geometric IL_6CZR_136 NA | |
| IL_6W6P_134 | 1/a/677:681, 1/a/755:758 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_6W6P_175 | 1/a/688:692, 1/a/728:732 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.4 | |
| IL_6W6P_136 | 1/a/699:703, 1/a/714:721 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_6W6P_137 | 1/a/789:793, 1/a/819:820 | Left turn | homologous IL_5J7L_036 NA | |
| IL_6W6P_138 | 1/a/794:798, 1/a/814:818 | tSH-tWH-tHS | homologous IL_6CZR_145 NA | |
| IL_6W6P_139 | 1/a/903:910, 1/a/921:926 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.2 | |
| IL_6W6P_140 | 1/a/938:939, 1/a/1408:1410 | Single bulged A | homologous IL_4LFB_035 IL_14190.3 | |
| IL_6W6P_141 | 1/a/941:943, 1/a/1405:1406 | Single bulged G | homologous IL_5J7L_040 NA | |
| IL_6W6P_142 | 1/a/949:951, 1/a/1395:1399 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_6W6P_143 | 1/a/969:970, 1/a/1241:1243 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_6W6P_144 | 1/a/1009:1013, 1/a/1060:1061 | Minor groove platform | homologous IL_5J7L_043 NA | |
| IL_6W6P_145 | 1/a/1014:1015, 1/a/1057:1059 | Single stack bend | homologous IL_5J7L_044 NA | |
| IL_6W6P_146 | 1/a/1064:1066, 1/a/1223:1224 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_6W6P_147 | 1/a/1068:1072, 1/a/1219:1221 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.2 | |
| IL_6W6P_148 | 1/a/1073:1074, 1/a/1214:1218 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_6W6P_149 | 1/a/1076:1077, 1/a/1210:1212 | Single bulged U | homologous IL_4LFB_046 IL_97561.6 | |
| IL_6W6P_150 | 1/a/1077:1079, 1/a/1208:1210 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_6W6P_151 | 1/a/1140:1143, 1/a/1160:1164 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_6W6P_152 | 1/a/1145:1148, 1/a/1157:1158 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_6W6P_153 | 1/a/1173:1176, 1/a/1190:1196 | No text annotation | homologous IL_5J7L_053 NA | |
| IL_6W6P_154 | 1/a/1262:1268, 1/a/1299:1305 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_6W6P_155 | 1/a/1270:1273, 1/a/1292:1297 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_6W6P_156 | 1/a/1274:1277, 1/a/1288:1291 | Tandem non-canonical cWW pairs | geometric IL_4V88_461 NA | |
| IL_6W6P_157 | 1/a/1318:1323, 1/a/1344:1349 | No text annotation | homologous IL_4LFB_055 IL_57885.3 | |
| IL_6W6P_158 | 1/a/1414:1416, 1/a/1517:1520 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_6W6P_159 | 1/a/1416:1419, 1/a/1513:1517 | No text annotation | geometric IL_4V88_464 NA | |
| IL_6W6P_160 | 1/a/1420:1422, 1/a/1510:1512 | Isolated non-canonical cWW pair | geometric IL_5MWI_007 NA | |
| IL_6W6P_161 | 1/a/1422:1424, 1/a/1507:1510 | Decoding loop related | geometric IL_3C3Z_002 IL_53541.1 | |
| IL_6W6P_162 | 1/a/1427:1429, 1/a/1502:1504 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_6W6P_163 | 1/a/1431:1434, 1/a/1497:1500 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_6W6P_164 | 1/a/1439:1442, 1/a/1489:1492 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_6W6P_165 | 1/a/1445:1450, 1/a/1482:1486 | Triple sheared related | geometric IL_5J7L_063 NA | |
| IL_6W6P_166 | 1/a/1450:1452, 1/a/1480:1482 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.5 | |
| IL_6W6P_167 | 1/a/1455:1458, 1/a/1475:1477 | Isolated tHS basepair with bulges | geometric IL_7RQB_012 NA | |
| IL_6W6P_168 | 1/a/1460:1463, 1/a/1471:1473 | No text annotation | homologous IL_5J7L_065 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6W6P_170 | No text annotation | ||
| IL_6W6P_171 | No text annotation | ||
| IL_6W6P_172 | Isolated cWS basepair | ||
| IL_6W6P_135 | No text annotation | ||
| IL_6W6P_176 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6W6P_001 | 1/A/31:32, 1/A/514:521, 1/A/548:549 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_6W6P_026 | 1/A/31:32, 1/A/514:524, 1/A/535:549 | No text annotation | homologous J3_4WF9_011 J3_17917.2 | |
| J3_6W6P_027 | 1/A/33:36, 1/A/485:501, 1/A/508:513 | No text annotation | homologous J3_4WF9_012 J3_07616.2 | |
| J3_6W6P_002 | 1/A/57:68, 1/A/75:77, 1/A/110:114 | No text annotation | homologous J3_4WF9_001 J3_47707.1 | |
| J3_6W6P_003 | 1/A/272:276, 1/A/295:302, 1/A/409:410 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_6W6P_028 | 1/A/334:338, 1/A/353:362, 1/A/374:378 | No text annotation | homologous J3_5J7L_068 NA | |
| J3_6W6P_004 | 1/A/723:729, 1/A/813:815, 1/A/831:834 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_6W6P_005 | 1/A/738:740, 1/A/772:776, 1/A/800:803 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6W6P_006 | 1/A/1334:1339, 1/A/1668:1670, 1/A/1682:1685 | No text annotation | homologous J3_4WF9_004 J3_32852.7 | |
| J3_6W6P_007 | 1/A/1341:1345, 1/A/1648:1654, 1/A/1663:1666 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
| J3_6W6P_029 | 1/A/1380:1386, 1/A/1417:1421, 1/A/1438:1439 | No text annotation | homologous J3_7A0S_018 J3_94309.2 | |
| J3_6W6P_030 | 1/A/1466:1471, 1/A/1610:1611, 1/A/1614:1620 | No text annotation | homologous J3_7A0S_019 J3_34864.3 | |
| J3_6W6P_008 | 1/A/1486:1510, 1/A/1569:1573, 1/A/1588:1593 | No text annotation | ||
| J3_6W6P_009 | 1/A/2105:2107, 1/A/2210:2215, 1/A/2236:2242 | No text annotation | homologous J3_4WF9_007 J3_07703.1 | |
| J3_6W6P_031 | 1/A/2296:2298, 1/A/2398:2409, 1/A/2435:2441 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_6W6P_010 | 1/A/2309:2311, 1/A/2335:2337, 1/A/2346:2351 | No text annotation | homologous J3_4WF9_008 J3_05327.2 | |
| J3_6W6P_011 | 1/A/2531:2534, 1/A/2559:2561, 1/A/2575:2581 | No text annotation | homologous J3_4WF9_009 J3_32601.6 | |
| J3_6W6P_012 | 1/A/2803:2805, 1/A/2816:2822, 1/A/2900:2904 | No text annotation | ||
| J3_6W6P_013 | 1/A/2825:2826, 1/A/2842:2847, 1/A/2893:2897 | No text annotation | homologous J3_7A0S_013 J3_76911.2 | |
| J3_6W6P_014 | 1/B/9:14, 1/B/66:69, 1/B/103:107 | No text annotation | ||
| J3_6W6P_015 | 1/a/43:44, 1/a/376:382, 1/a/408:410 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_6W6P_032 | 1/a/43:49, 1/a/374:382, 1/a/408:410 | No text annotation | homologous J3_4LFB_014 J3_63856.2 | |
| J3_6W6P_016 | 1/a/601:603, 1/a/666:669, 1/a/769:770 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_6W6P_033 | 1/a/601:603, 1/a/666:670, 1/a/766:770 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_6W6P_017 | 1/a/687:688, 1/a/732:740, 1/a/747:749 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_6W6P_018 | 1/a/841:844, 1/a/873:877, 1/a/884:890 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_6W6P_034 | 1/a/952:955, 1/a/1359:1365, 1/a/1387:1394 | No text annotation | homologous J3_5J7L_052 NA | |
| J3_6W6P_019 | 1/a/959:962, 1/a/1250:1252, 1/a/1352:1355 | No text annotation | homologous J3_4LFB_003 J3_44359.2 | |
| J3_6W6P_020 | 1/a/971:978, 1/a/989:1000, 1/a/1236:1240 | No text annotation | homologous J3_4LFB_004 J3_88451.2 | |
| J3_6W6P_021 | 1/a/1006:1009, 1/a/1061:1063, 1/a/1225:1230 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_6W6P_038 | 1/a/1006:1013, 1/a/1060:1063, 1/a/1225:1230 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_6W6P_039 | 1/a/1017:1024, 1/a/1037:1044, 1/a/1051:1055 | No text annotation | ||
| J3_6W6P_022 | 1/a/1079:1084, 1/a/1123:1129, 1/a/1202:1208 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_6W6P_023 | 1/a/1089:1090, 1/a/1099:1103, 1/a/1114:1118 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_6W6P_024 | 1/a/1132:1134, 1/a/1170:1173, 1/a/1196:1199 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_6W6P_037 | 1/a/1132:1134, 1/a/1170:1176, 1/a/1190:1199 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_6W6P_025 | 1/a/1252:1256, 1/a/1311:1318, 1/a/1349:1352 | No text annotation | homologous J3_5J7L_011 NA | |
| J4_6W6P_001 | 1/A/271:272, 1/A/410:415, 1/A/439:446, 1/A/461:464 | No text annotation | homologous J4_4WF9_001 J4_94698.2 | |
| J4_6W6P_002 | 1/A/334:338, 1/A/353:356, 1/A/360:362, 1/A/374:378 | No text annotation | homologous J4_5J7L_019 NA | |
| J4_6W6P_003 | 1/A/638:641, 1/A/663:667, 1/A/674:677, 1/A/689:696 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_6W6P_004 | 1/A/1307:1312, 1/A/1330:1331, 1/A/1688:1691, 1/A/2023:2024 | No text annotation | homologous J4_4WF9_004 J4_64571.6 | |
| J4_6W6P_005 | 1/A/1346:1350, 1/A/1374:1379, 1/A/1440:1441, 1/A/1640:1647 | No text annotation | homologous J4_4WF9_005 J4_77353.2 | |
| J4_6W6P_006 | 1/A/1349:1350, 1/A/1374:1379, 1/A/1440:1441, 1/A/1640:1646 | No text annotation | homologous J4_4WF9_006 J4_48150.2 | |
| J4_6W6P_007 | 1/A/1786:1790, 1/A/1802:1806, 1/A/1841:1845, 1/A/1988:1993 | No text annotation | ||
| J4_6W6P_008 | 1/A/1847:1849, 1/A/1919:1920, 1/A/1938:1947, 1/A/1981:1986 | No text annotation | homologous J4_9DFE_008 J4_42306.2 | |
| J4_6W6P_009 | 1/A/2299:2303, 1/A/2357:2361, 1/A/2384:2386, 1/A/2395:2397 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_6W6P_010 | 1/A/2657:2660, 1/A/2688:2690, 1/A/2745:2749, 1/A/2783:2785 | No text annotation | homologous J4_5J7L_028 NA | |
| J4_6W6P_011 | 1/a/120:128, 1/a/253:255, 1/a/301:304, 1/a/326:327 | No text annotation | ||
| J4_6W6P_012 | 1/a/148:150, 1/a/184:192, 1/a/211:219, 1/a/234:236 | No text annotation | ||
| J4_6W6P_013 | 1/a/590:592, 1/a/779:784, 1/a/825:836, 1/a/895:896 | No text annotation | homologous J4_5J7L_003 NA | |
| J5_6W6P_001 | 1/A/48:55, 1/A/116:121, 1/A/130:131, 1/A/150:152, 1/A/178:180 | No text annotation | homologous J5_4WF9_001 J5_27223.2 | |
| J5_6W6P_002 | 1/A/271:276, 1/A/295:302, 1/A/409:415, 1/A/439:446, 1/A/461:464 | No text annotation | ||
| J5_6W6P_003 | 1/A/570:572, 1/A/597:601, 1/A/614:616, 1/A/1298:1299, 1/A/2031:2032 | No text annotation | homologous J5_4WF9_003 J5_43153.6 | |
| J5_6W6P_004 | 1/A/621:626, 1/A/708:711, 1/A/849:852, 1/A/1233:1234, 1/A/1287:1293 | No text annotation | homologous J5_4WF9_004 J5_74302.6 | |
| J5_6W6P_005 | 1/A/1717:1725, 1/A/1749:1750, 1/A/1765:1766, 1/A/1770:1778, 1/A/2002:2004 | No text annotation | homologous J5_4WF9_005 J5_99177.2 | |
| J5_6W6P_006 | 1/A/2071:2078, 1/A/2460:2468, 1/A/2512:2520, 1/A/2597:2602, 1/A/2620:2625 | No text annotation | ||
| J5_6W6P_007 | 1/A/2088:2091, 1/A/2257:2260, 1/A/2272:2273, 1/A/2295:2296, 1/A/2441:2449 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J5_6W6P_008 | 1/a/33:36, 1/a/418:421, 1/a/451:456, 1/a/508:515, 1/a/560:563 | No text annotation | ||
| J5_6W6P_009 | 1/a/55:58, 1/a/111:118, 1/a/329:331, 1/a/352:354, 1/a/365:369 | No text annotation | homologous J5_4LFB_002 J5_58574.2 | |
| J6_6W6P_001 | 1/A/46:47, 1/A/181:186, 1/A/217:227, 1/A/234:238, 1/A/265:269, 1/A/466:473 | No text annotation | ||
| J6_6W6P_002 | 1/A/2088:2091, 1/A/2257:2260, 1/A/2272:2273, 1/A/2295:2298, 1/A/2398:2409, 1/A/2435:2449 | No text annotation | ||
| J7_6W6P_001 | 1/A/9:16, 1/A/564:570, 1/A/2032:2037, 1/A/2054:2057, 1/A/2639:2644, 1/A/2802:2803, 1/A/2904:2905 | No text annotation | ||
| J7_6W6P_002 | 1/A/857:862, 1/A/875:876, 1/A/983:986, 1/A/1011:1016, 1/A/1027:1031, 1/A/1203:1204, 1/A/1223:1228 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6W6P_035 | No text annotation | ||
| J3_6W6P_036 | No text annotation |
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