HL_6W7M_008

3D structure

PDB id

6W7M (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-high-Mg2+ + carbon layer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W7M_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1751

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6W7M|1|A|A|320
6W7M|1|A|A|321
6W7M|1|A|C|322
6W7M|1|A|U|323
6W7M|1|A|G|324
6W7M|1|A|A|325
6W7M|1|A|G|326
6W7M|1|A|A|327
6W7M|1|A|C|328
6W7M|1|A|A|329
6W7M|1|A|C|330
6W7M|1|A|G|331
6W7M|1|A|G|332
6W7M|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20