HL_6W7W_008

3D structure

PDB id

6W7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-low-Mg2+ Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W7W_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1878

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6W7W|1|2|A|320
6W7W|1|2|A|321
6W7W|1|2|C|322
6W7W|1|2|U|323
6W7W|1|2|G|324
6W7W|1|2|A|325
6W7W|1|2|G|326
6W7W|1|2|A|327
6W7W|1|2|C|328
6W7W|1|2|A|329
6W7W|1|2|C|330
6W7W|1|2|G|331
6W7W|1|2|G|332
6W7W|1|2|U|333

Current chains

Chain 2

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S16

Chain S

30S ribosomal protein S20