Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6W7W_0011/2/12:22No text annotation
homologous
HL_5J7L_001
NA
HL_6W7W_0061/2/259:267GNRA related
homologous
HL_5J7L_006
NA
HL_6W7W_0071/2/296:301GNRA
homologous
HL_5J7L_007
NA
HL_6W7W_0081/2/320:333No text annotation
homologous
HL_4LFB_008
HL_39665.1
HL_6W7W_0091/2/342:347UNCG
homologous
HL_4LFB_009
HL_61337.1
HL_6W7W_0101/2/379:384GNRA
homologous
HL_6CZR_081
NA
HL_6W7W_0111/2/419:424UNCG
homologous
HL_5J7L_011
NA
HL_6W7W_0131/2/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.6
HL_6W7W_0141/2/617:623GNRA-like with tWH
homologous
HL_5J7L_014
NA
HL_6W7W_0161/2/726:731GNRA
homologous
HL_6CZR_087
NA
HL_6W7W_0181/2/862:867GNRA
homologous
HL_4LFB_019
HL_34789.1

Problematic loops

#loop idProblemSequence
HL_6W7W_002Mini UNCG
HL_6W7W_003GNRA
HL_6W7W_004GNRA
HL_6W7W_005No text annotation
HL_6W7W_012GNRA wlth extra near cWW
HL_6W7W_015No text annotation
HL_6W7W_017No text annotation
HL_6W7W_019GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6W7W_0011/2/30:32,
1/2/552:553
Single bulged G
homologous
IL_5J7L_001
NA
IL_6W7W_0021/2/44:45,
1/2/396:398
Single bulged A
homologous
IL_5J7L_002
NA
IL_6W7W_0031/2/47:52,
1/2/359:361
No text annotation
geometric
IL_5J7L_003
NA
IL_6W7W_0041/2/54:56,
1/2/356:357
Minor groove platform
homologous
IL_4LFB_004
IL_34520.1
IL_6W7W_0051/2/63:66,
1/2/103:104
Multiple bulged bases
homologous
IL_5J7L_005
NA
IL_6W7W_0061/2/67:69,
1/2/99:102
Minor groove platform with extra cWW
homologous
IL_5J7L_006
NA
IL_6W7W_0091/2/128:131,
1/2/231:233
Isolated non-canonical cWW pair
homologous
IL_5J7L_009
NA
IL_6W7W_0101/2/132:136,
1/2/227:230
No text annotation
homologous
IL_4LFB_008
IL_60988.1
IL_6W7W_0111/2/144:146,
1/2/176:178
Isolated cWH basepair
homologous
IL_5J7L_011
NA
IL_6W7W_0121/2/147:153,
1/2/168:175
tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
NA
IL_6W7W_0141/2/242:247,
1/2/277:284
Kink-turn with non-sequential stacking
geometric
IL_4V88_402
NA
IL_6W7W_0151/2/249:252,
1/2/274:275
No text annotation
homologous
IL_5J7L_015
NA
IL_6W7W_0161/2/292:293,
1/2/304:308
C-loop
homologous
IL_4LFB_013
IL_06671.1
IL_6W7W_0171/2/367:369,
1/2/392:393
Single bulged U
homologous
IL_5J7L_017
NA
IL_6W7W_0181/2/371:375,
1/2/389:390
C-loop
geometric
IL_5J7L_018
NA
IL_6W7W_0191/2/375:376,
1/2/387:389
Single bulged G
homologous
IL_5J7L_019
NA
IL_6W7W_0211/2/440:442,
1/2/492:497
No text annotation
homologous
IL_5J7L_021
NA
IL_6W7W_0221/2/446:450,
1/2/483:488
tSH-tHW-tWW
homologous
IL_5J7L_022
NA
IL_6W7W_0231/2/450:454,
1/2/479:483
No text annotation
IL_6W7W_0241/2/454:455,
1/2/477:479
Single stack bend
geometric
IL_5J7L_032
NA
IL_6W7W_0251/2/504:511,
1/2/540:541
SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_11411.1
IL_6W7W_0261/2/515:521,
1/2/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_6W7W_0271/2/569:575,
1/2/880:881
No text annotation
homologous
IL_6CZR_134
NA
IL_6W7W_0281/2/580:584,
1/2/757:761
tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_6W7W_0301/2/597:598,
1/2/640:643
Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_73108.1
IL_6W7W_0311/2/605:613,
1/2/627:633
No text annotation
IL_6W7W_0401/2/887:894,
1/2/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_84044.1

Problematic loops

#loop idProblemSequence
IL_6W7W_007Minor groove platform
IL_6W7W_008Single bulged G
IL_6W7W_013Minor groove platform
IL_6W7W_020No text annotation
IL_6W7W_029Major groove platform
IL_6W7W_032Major groove platform; stack outside cWW
IL_6W7W_033Single stack bend
IL_6W7W_039Single stack bend
IL_6W7W_034Tandem non-canonical cWW pairs
IL_6W7W_035Single stack bend
IL_6W7W_036No text annotation
IL_6W7W_037tSH-tHW-tHS
IL_6W7W_0389x7 Sarcin-Ricin with inserted C; G-bulge

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6W7W_0011/2/46:47,
1/2/361:367,
1/2/393:395
No text annotation
homologous
J3_5J7L_001
NA
J3_6W7W_0021/2/586:588,
1/2/651:654,
1/2/754:755
No text annotation
homologous
J3_5J7L_002
NA
J3_6W7W_0051/2/586:588,
1/2/651:655,
1/2/751:755
No text annotation
homologous
J3_5J7L_051
NA
J3_6W7W_0041/2/826:829,
1/2/857:861,
1/2/868:874
No text annotation
homologous
J3_5J7L_004
NA
J4_6W7W_0011/2/115:122,
1/2/239:240,
1/2/286:289,
1/2/311:312
No text annotation
homologous
J4_5J7L_001
NA
J4_6W7W_0021/2/142:144,
1/2/178:184,
1/2/193:198,
1/2/219:221
No text annotation
homologous
J4_5J7L_002
NA
J4_6W7W_0031/2/575:577,
1/2/764:769,
1/2/810:821,
1/2/879:880
No text annotation
homologous
J4_4LFB_003
J4_14595.1
J5_6W7W_0011/2/36:39,
1/2/403:406,
1/2/436:440,
1/2/497:500,
1/2/545:548
No text annotation
J5_6W7W_0021/2/36:39,
1/2/403:406,
1/2/436:442,
1/2/492:500,
1/2/545:548
No text annotation
J5_6W7W_0031/2/58:61,
1/2/106:113,
1/2/314:316,
1/2/337:339,
1/2/350:354
No text annotation
homologous
J5_5J7L_003
NA

Problematic loops

#loop idProblemSequence
J3_6W7W_003No text annotation

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