RNA 3D Hub //

6W7W Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6W7W_0011/2/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_6W7W_0021/2/83:86Mini UNCG
geometric
HL_5TBW_071
NA
HL_6W7W_0031/2/158:163GNRA
homologous
HL_5J7L_003
HL_37824.7
HL_6W7W_0041/2/186:191GNRA
homologous
HL_5J7L_004
HL_37824.7
HL_6W7W_0051/2/206:213No text annotation
HL_6W7W_0061/2/259:267GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_6W7W_0071/2/296:301GNRA
homologous
HL_5J7L_007
HL_37824.7
HL_6W7W_0081/2/320:333No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_6W7W_0091/2/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_6W7W_0101/2/379:384GNRA
homologous
HL_6CZR_081
NA
HL_6W7W_0111/2/419:424UNCG
homologous
HL_5J7L_011
HL_34617.5
HL_6W7W_0121/2/462:470GNRA related
homologous
HL_5J7L_012
HL_81538.2
HL_6W7W_0131/2/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_6W7W_0141/2/617:623No text annotation
homologous
HL_5J7L_014
HL_10453.3
HL_6W7W_0161/2/726:731GNRA
homologous
HL_6CZR_087
NA
HL_6W7W_0171/2/840:846No text annotation
HL_6W7W_0181/2/862:867GNRA
homologous
HL_4LFB_019
HL_37824.7
HL_6W7W_0191/2/897:902GNRA
homologous
HL_4LFB_020
HL_37824.7

Problematic loops

#loop idProblemSequence
HL_6W7W_015No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6W7W_0011/2/30:32,
1/2/552:553		Single bulged G
homologous
IL_5J7L_001
IL_00225.13
IL_6W7W_0021/2/44:45,
1/2/396:398		Single bulged A
homologous
IL_5J7L_002
IL_31462.6
IL_6W7W_0031/2/47:52,
1/2/359:361		No text annotation
geometric
IL_5J7L_003
IL_14177.2
IL_6W7W_0041/2/54:56,
1/2/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_51454.3
IL_6W7W_0051/2/63:66,
1/2/103:104		Multiple bulged bases
homologous
IL_5J7L_005
IL_82107.4
IL_6W7W_0061/2/67:69,
1/2/99:102		Minor groove platform with extra cWW
homologous
IL_5J7L_006
IL_90351.1
IL_6W7W_0071/2/70:73,
1/2/97:98		Minor groove platform
homologous
IL_5J7L_007
IL_15052.4
IL_6W7W_0081/2/75:76,
1/2/93:95		Single bulged G
geometric
IL_5DEA_002
IL_00225.13
IL_6W7W_0091/2/128:131,
1/2/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_6W7W_0101/2/132:136,
1/2/227:230		No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_6W7W_0111/2/144:146,
1/2/176:178		Isolated cWH basepair
homologous
IL_5J7L_011
IL_10167.6
IL_6W7W_0121/2/147:153,
1/2/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_6W7W_0131/2/203:206,
1/2/213:214		Minor groove platform
geometric
IL_5J7L_007
IL_15052.4
IL_6W7W_0141/2/242:247,
1/2/277:284		Kink-turn with non-sequential stacking
geometric
IL_4V88_402
NA
IL_6W7W_0151/2/249:252,
1/2/274:275		No text annotation
homologous
IL_5J7L_015
IL_47074.2
IL_6W7W_0161/2/292:293,
1/2/304:308		C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_6W7W_0171/2/367:369,
1/2/392:393		Single bulged U
homologous
IL_5J7L_017
IL_89505.4
IL_6W7W_0181/2/371:375,
1/2/389:390		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_6W7W_0191/2/375:376,
1/2/387:389		Single bulged G
homologous
IL_5J7L_019
IL_00225.13
IL_6W7W_0201/2/409:416,
1/2/427:433		No text annotation
homologous
IL_5J7L_020
IL_28026.3
IL_6W7W_0211/2/440:442,
1/2/492:497		No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_6W7W_0221/2/446:450,
1/2/483:488		tSH-tHW-tWW
homologous
IL_5J7L_022
IL_88269.4
IL_6W7W_0231/2/450:454,
1/2/479:483		No text annotation
IL_6W7W_0241/2/454:455,
1/2/477:479		Single stack bend
geometric
IL_5J7L_032
IL_26793.1
IL_6W7W_0251/2/504:511,
1/2/540:541		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_41203.4
IL_6W7W_0261/2/515:521,
1/2/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_6W7W_0271/2/569:575,
1/2/880:881		No text annotation
homologous
IL_6CZR_134
NA
IL_6W7W_0281/2/580:584,
1/2/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_6W7W_0291/2/594:596,
1/2/644:645		Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_6W7W_0301/2/597:598,
1/2/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_68140.4
IL_6W7W_0311/2/605:613,
1/2/627:633		No text annotation
IL_6W7W_0321/2/654:655,
1/2/751:754		Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_50694.7
IL_6W7W_0331/2/658:659,
1/2/746:748		Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_6W7W_0391/2/659:660,
1/2/745:747		Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_6W7W_0341/2/662:666,
1/2/740:743		Tandem non-canonical cWW pairs
homologous
IL_4LFB_029
IL_85033.2
IL_6W7W_0351/2/773:775,
1/2/805:806		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_6W7W_0361/2/775:779,
1/2/803:805		No text annotation
IL_6W7W_0371/2/779:783,
1/2/799:803		tSH-tHW-tHS
homologous
IL_6CZR_145
NA
IL_6W7W_0401/2/887:894,
1/2/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_41756.4

Problematic loops

#loop idProblemSequence
IL_6W7W_0389x7 Sarcin-Ricin with inserted C; G-bulge

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6W7W_0011/2/46:47,
1/2/361:367,
1/2/393:395		No text annotation
homologous
J3_5J7L_001
J3_67856.4
J3_6W7W_0021/2/586:588,
1/2/651:654,
1/2/754:755		No text annotation
homologous
J3_5J7L_002
J3_56052.5
J3_6W7W_0051/2/586:588,
1/2/651:655,
1/2/751:755		No text annotation
homologous
J3_5J7L_051
J3_17385.4
J3_6W7W_0031/2/672:673,
1/2/717:725,
1/2/732:734		No text annotation
homologous
J3_5J7L_003
J3_11934.4
J3_6W7W_0041/2/826:829,
1/2/857:861,
1/2/868:874		No text annotation
homologous
J3_5J7L_004
J3_85054.4
J4_6W7W_0011/2/115:122,
1/2/239:240,
1/2/286:289,
1/2/311:312		No text annotation
homologous
J4_5J7L_001
J4_35578.3
J4_6W7W_0021/2/142:144,
1/2/178:184,
1/2/193:198,
1/2/219:221		No text annotation
homologous
J4_5J7L_002
J4_01665.1
J4_6W7W_0031/2/575:577,
1/2/764:769,
1/2/810:821,
1/2/879:880		No text annotation
homologous
J4_4LFB_003
J4_61885.6
J5_6W7W_0011/2/36:39,
1/2/403:406,
1/2/436:440,
1/2/497:500,
1/2/545:548		No text annotation
J5_6W7W_0021/2/36:39,
1/2/403:406,
1/2/436:442,
1/2/492:500,
1/2/545:548		No text annotation
J5_6W7W_0031/2/58:61,
1/2/106:113,
1/2/314:316,
1/2/337:339,
1/2/350:354		No text annotation
homologous
J5_5J7L_003
J5_59910.6

Problematic loops

No problematic loops


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