HL_6WBR_001

3D structure

PDB id

6WBR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of AceCas9 bound with guide RNA and DNA with 5'-NNNCC-3' PAM

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WBR_001 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2255

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6WBR|1|B|U|32
6WBR|1|B|G|33
6WBR|1|B|A|34
6WBR|1|B|A|35
6WBR|1|B|A|36
6WBR|1|B|A|37

Current chains

Chain B

RNA (94-MER)

Nearby chains