HL_6WD1_105

3D structure

PDB id

6WD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

6WD1|1|1|A|781, 6WD1|1|1|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WD1_105 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1855

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

6WD1|1|1|U|779
6WD1|1|1|G|780
6WD1|1|1|A|781
6WD1|1|1|A|782
6WD1|1|1|A|783
6WD1|1|1|G|784
6WD1|1|1|G|785

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2