3D structure

PDB id
6WD3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-B1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
6WD3|1|1|G|2751
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WD3_065 not in the Motif Atlas
Homologous match to HL_4WF9_062
Geometric discrepancy: 0.1227
The information below is about HL_4WF9_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

6WD3|1|1|C|2745
6WD3|1|1|U|2746
6WD3|1|1|G|2747
6WD3|1|1|A|2748
6WD3|1|1|A|2749
6WD3|1|1|A|2750
6WD3|1|1|G|2751
6WD3|1|1|C|2752
6WD3|1|1|A|2753
6WD3|1|1|U|2754
6WD3|1|1|C|2755
6WD3|1|1|U|2756
6WD3|1|1|A|2757
6WD3|1|1|A|2758
6WD3|1|1|G|2759

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain F
50S ribosomal protein L36
Chain f
50S ribosomal protein L6
Chain j
50S ribosomal protein L13

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