Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6WD3_0011/1/59:68No text annotation
homologous
HL_5J7L_134
NA
HL_6WD3_0021/1/87:95No text annotation
homologous
HL_5J7L_135
NA
HL_6WD3_0031/1/123:128No text annotation
homologous
HL_5J7L_136
NA
HL_6WD3_0051/1/158:168No text annotation
homologous
HL_5J7L_138
NA
HL_6WD3_0061/1/194:201No text annotation
geometric
HL_5J7L_139
NA
HL_6WD3_0071/1/225:230No text annotation
homologous
HL_5J7L_140
NA
HL_6WD3_0081/1/246:252No text annotation
homologous
HL_5J7L_141
NA
HL_6WD3_0091/1/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
NA
HL_6WD3_0101/1/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_6WD3_0111/1/382:392No text annotation
homologous
HL_5J7L_145
NA
HL_6WD3_0121/1/410:417Pseudoknot geometry
homologous
HL_5J7L_146
NA
HL_6WD3_0131/1/462:467GNRA
homologous
HL_4WF9_015
HL_34789.1
HL_6WD3_0141/1/487:493GNRA
homologous
HL_5J7L_148
NA
HL_6WD3_0161/1/566:575T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
NA
HL_6WD3_0181/1/629:634GNRA
homologous
HL_5J7L_152
NA
HL_6WD3_0191/1/641:647No text annotation
homologous
HL_5J7L_153
NA
HL_6WD3_0211/1/744:753No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_6WD3_0221/1/779:785No text annotation
geometric
HL_5U3G_001
NA
HL_6WD3_0231/1/826:831No text annotation
homologous
HL_4WF9_025
HL_27530.1
HL_6WD3_0251/1/955:962GNRA
homologous
HL_4WF9_027
HL_34789.1
HL_6WD3_0261/1/978:985No text annotation
homologous
HL_4WF9_028
HL_47171.1
HL_6WD3_1121/1/1222:1227GNRA
homologous
HL_5J7L_164
NA
HL_6WD3_0311/1/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_6WD3_0321/1/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_6WD3_0331/1/1363:1368GNRA
homologous
HL_5J7L_167
NA
HL_6WD3_0341/1/1389:1398No text annotation
homologous
HL_5J7L_168
NA
HL_6WD3_0351/1/1450:1461No text annotation
geometric
HL_2ZZM_002
NA
HL_6WD3_0381/1/1565:1568No text annotation
homologous
HL_7RQB_039
NA
HL_6WD3_0391/1/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_6WD3_0401/1/1630:1636GNRA
homologous
HL_5J7L_174
NA
HL_6WD3_0411/1/1691:1696UNCG
geometric
HL_5J7L_011
NA
HL_6WD3_0431/1/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_6WD3_0441/1/1777:1787No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_6WD3_0451/1/1806:1811GNRA related
homologous
HL_5J7L_179
NA
HL_6WD3_0471/1/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_6WD3_0481/1/1949:1957No text annotation
homologous
HL_4WF9_046
HL_61418.1
HL_6WD3_0491/1/2027:2036No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_6WD3_0511/1/2209:2215No text annotation
homologous
HL_5J7L_185
NA
HL_6WD3_0521/1/2248:2256No text annotation
homologous
HL_7A0S_052
HL_11974.1
HL_6WD3_0531/1/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_6WD3_0541/1/2303:2313No text annotation
homologous
HL_5J7L_188
NA
HL_6WD3_0551/1/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
NA
HL_6WD3_0561/1/2356:2361GNRA
homologous
HL_5J7L_190
NA
HL_6WD3_0571/1/2374:2379GNRA
homologous
HL_4WF9_054
HL_34789.1
HL_6WD3_0581/1/2404:2413No text annotation
homologous
HL_5J7L_192
NA
HL_6WD3_0591/1/2471:2479No text annotation
homologous
HL_4WF9_056
HL_52011.1
HL_6WD3_0601/1/2528:2535No text annotation
homologous
HL_7RQB_061
NA
HL_6WD3_0611/1/2551:2557No text annotation
homologous
HL_5J7L_195
NA
HL_6WD3_0621/1/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_6WD3_0641/1/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
NA
HL_6WD3_0651/1/2745:2759No text annotation
homologous
HL_4WF9_062
HL_53269.1
HL_6WD3_0671/1/2819:2827No text annotation
homologous
HL_5J7L_201
NA
HL_6WD3_0681/1/2856:2861GNRA
homologous
HL_5J7L_202
NA
HL_6WD3_0691/2/38:44No text annotation
homologous
HL_7RQB_070
NA
HL_6WD3_0701/2/86:90Mini UNCG
homologous
HL_5J7L_204
NA
HL_6WD3_0711/3/12:22No text annotation
homologous
HL_5J7L_001
NA
HL_6WD3_0731/3/158:163GNRA
homologous
HL_5J7L_003
NA
HL_6WD3_0761/3/259:267GNRA related
homologous
HL_5J7L_006
NA
HL_6WD3_0771/3/296:301GNRA
homologous
HL_5J7L_007
NA
HL_6WD3_0781/3/320:333No text annotation
homologous
HL_6CZR_079
NA
HL_6WD3_0791/3/342:347UNCG
homologous
HL_4LFB_009
HL_61337.1
HL_6WD3_0801/3/379:384GNRA
homologous
HL_5J7L_010
NA
HL_6WD3_0821/3/462:470GNRA wlth extra near cWW
homologous
HL_5J7L_012
NA
HL_6WD3_0831/3/522:527Externally structured
geometric
HL_5TBW_022
NA
HL_6WD3_0841/3/617:623GNRA-like with tWH
homologous
HL_4LFB_014
HL_92337.1
HL_6WD3_0851/3/689:698No text annotation
homologous
HL_5J7L_015
NA
HL_6WD3_0861/3/726:731GNRA
homologous
HL_5J7L_016
NA
HL_6WD3_0871/3/786:796No text annotation
homologous
HL_4LFB_017
HL_38491.1
HL_6WD3_0891/3/862:867GNRA
homologous
HL_5J7L_019
NA
HL_6WD3_0901/3/897:902GNRA
homologous
HL_4LFB_020
HL_34789.1
HL_6WD3_0911/3/963:972No text annotation
homologous
HL_5J7L_021
NA
HL_6WD3_0941/3/1076:1081GNRA
homologous
HL_5J7L_023
NA
HL_6WD3_0951/3/1089:1096T-loop related
homologous
HL_4LFB_025
HL_63894.1
HL_6WD3_0991/3/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_93658.1
HL_6WD3_1011/3/1449:1454UNCG
homologous
HL_5J7L_030
NA
HL_6WD3_1021/3/1515:1520GNRA
homologous
HL_6CZR_103
NA
HL_6WD3_1031/5/13:22tRNA D-loop
homologous
HL_1QF6_001
NA
HL_6WD3_1041/5/31:39tRNA anticodon loop
homologous
HL_4TUE_034
NA

Problematic loops

#loop idProblemSequence
HL_6WD3_004No text annotation
HL_6WD3_015Mini UNCG with extended bulge
HL_6WD3_017No text annotation
HL_6WD3_020GNRA wlth tandem sheared
HL_6WD3_024No text annotation
HL_6WD3_027No text annotation
HL_6WD3_028GNRA wlth tandem sheared
HL_6WD3_029No text annotation
HL_6WD3_030No text annotation
HL_6WD3_036Pseudoknot geometry with 3' bulge
HL_6WD3_037UNCG
HL_6WD3_042No text annotation
HL_6WD3_046GNRA variation
HL_6WD3_050No text annotation
HL_6WD3_063GNRA
HL_6WD3_066UNCG variation
HL_6WD3_072No text annotation
HL_6WD3_074GNRA
HL_6WD3_075No text annotation
HL_6WD3_081UNCG
HL_6WD3_088Externally structured
HL_6WD3_092GNRA
HL_6WD3_093No text annotation
HL_6WD3_096No text annotation
HL_6WD3_097GNRA
HL_6WD3_098GNRA
HL_6WD3_100No text annotation
HL_6WD3_105T-loop with 2 stacked bulged bases
HL_6WD3_106No text annotation
HL_6WD3_107tRNA anticodon loop
HL_6WD3_108T-loop with 2 stacked bulged bases
HL_6WD3_109tRNA D-loop
HL_6WD3_110tRNA anticodon loop
HL_6WD3_111T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6WD3_0011/1/24:30,
1/1/510:516
Triple sheared with non-canonical cWW
homologous
IL_4WF9_001
IL_22311.1
IL_6WD3_0021/1/36:37,
1/1/442:444
Single bulged A
homologous
IL_7RQB_002
NA
IL_6WD3_0031/1/43:44,
1/1/434:436
Minor groove platform
homologous
IL_5J7L_247
NA
IL_6WD3_0041/1/81:85,
1/1/97:105
No text annotation
homologous
IL_5J7L_248
NA
IL_6WD3_0051/1/183:184,
1/1/212:214
Single stack bend
homologous
IL_5J7L_249
NA
IL_6WD3_0061/1/188:194,
1/1/201:208
8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_006
NA
IL_6WD3_0071/1/239:245,
1/1/253:258
7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
NA
IL_6WD3_0081/1/269:271,
1/1/366:370
No text annotation
homologous
IL_5J7L_252
NA
IL_6WD3_0111/1/481:484,
1/1/496:509
No text annotation
homologous
IL_5J7L_255
NA
IL_6WD3_0121/1/536:539,
1/1/554:557
Double sheared
homologous
IL_5J7L_256
NA
IL_6WD3_0131/1/564:566,
1/1/575:577
Isolated non-canonical cWW pair
geometric
IL_7A0S_011
IL_71625.1
IL_6WD3_0141/1/606:610,
1/1/618:622
AAA cross-strand stack
homologous
IL_5J7L_258
NA
IL_6WD3_0151/1/672:674,
1/1/806:808
Isolated non-canonical cWW pair
geometric
IL_5J7L_259
NA
IL_6WD3_0161/1/674:678,
1/1/799:806
tHW-tHW cross-strand stack
homologous
IL_5J7L_260
NA
IL_6WD3_0171/1/697:698,
1/1/763:765
Single bulged A
homologous
IL_5J7L_261
NA
IL_6WD3_0181/1/702:703,
1/1/728:730
Single bulged G
homologous
IL_5J7L_262
NA
IL_6WD3_0191/1/703:707,
1/1/724:728
Triple sheared
geometric
IL_7RQB_021
NA
IL_6WD3_0201/1/738:740,
1/1/757:758
Major groove platform
homologous
IL_5J7L_264
NA
IL_6WD3_0211/1/775:777,
1/1/787:791
Multiple bulged bases
geometric
IL_5J7L_265
NA
IL_6WD3_0221/1/844:847,
1/1/933:934
90 degree turn
homologous
IL_5J7L_267
NA
IL_6WD3_1761/1/844:848,
1/1/930:934
No text annotation
homologous
IL_5J7L_399
NA
IL_6WD3_0231/1/847:848,
1/1/930:933
Stack outside cWW
geometric
IL_5J7L_268
NA
IL_6WD3_0241/1/850:851,
1/1/926:928
Single stack bend
homologous
IL_5J7L_269
NA
IL_6WD3_0251/1/856:862,
1/1/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
NA
IL_6WD3_0271/1/864:868,
1/1/909:912
C-loop with bulged stacked A's
homologous
IL_5J7L_272
NA
IL_6WD3_0281/1/870:872,
1/1/905:907
Isolated non-canonical cWW pair
homologous
IL_5J7L_273
NA
IL_6WD3_0311/1/994:996,
1/1/1159:1160
Single bulged C
homologous
IL_7RQB_035
NA
IL_6WD3_0321/1/998:1002,
1/1/1153:1157
UAA/GAN
homologous
IL_7A0S_033
IL_08938.1
IL_6WD3_0331/1/1004:1011,
1/1/1150:1151
SSU/LSU pseudoknot
homologous
IL_4WF9_037
IL_11411.1
IL_6WD3_0341/1/1011:1013,
1/1/1149:1150
Single bulged U
geometric
IL_5J7L_279
NA
IL_6WD3_0351/1/1018:1024,
1/1/1140:1144
Kink-turn related
homologous
IL_4WF9_039
IL_57188.6
IL_6WD3_0361/1/1024:1030,
1/1/1124:1140
No text annotation
geometric
IL_5J7L_281
NA
IL_6WD3_0371/1/1031:1034,
1/1/1121:1123
Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_6WD3_0421/1/1196:1198,
1/1/1247:1250
Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.4
IL_6WD3_0431/1/1202:1206,
1/1/1240:1243
No text annotation
homologous
IL_5J7L_287
NA
IL_6WD3_0441/1/1208:1215,
1/1/1234:1238
Kink-turn
homologous
IL_7RQB_047
NA
IL_6WD3_0451/1/1262:1269,
1/1/2011:2017
8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_6WD3_0461/1/1310:1313,
1/1/1603:1604
Major groove platform; stack outside cWW
homologous
IL_4WF9_049
IL_74641.1
IL_6WD3_0471/1/1319:1323,
1/1/1331:1333
C-loop
homologous
IL_5J7L_291
NA
IL_6WD3_0481/1/1351:1355,
1/1/1376:1380
UAA/GAN
homologous
IL_5J7L_292
NA
IL_6WD3_0491/1/1357:1361,
1/1/1370:1374
tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_6WD3_0521/1/1432:1435,
1/1/1557:1561
Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_6WD3_0531/1/1437:1440,
1/1/1551:1555
tSH-tHW
homologous
IL_5J7L_297
NA
IL_6WD3_0541/1/1468:1471,
1/1/1520:1524
No text annotation
homologous
IL_5J7L_299
NA
IL_6WD3_0551/1/1474:1478,
1/1/1513:1517
tSH-tHW-tHS
homologous
IL_5J7L_300
NA
IL_6WD3_0581/1/1526:1529,
1/1/1542:1546
UAA/GAN variation
homologous
IL_5J7L_303
NA
IL_6WD3_0591/1/1651:1656,
1/1/2004:2006
No text annotation
homologous
IL_7RQB_064
NA
IL_6WD3_0601/1/1663:1665,
1/1/1995:1997
Isolated tWW turn
homologous
IL_5J7L_305
NA
IL_6WD3_0611/1/1666:1669,
1/1/1993:1994
Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_6WD3_1801/1/1666:1674,
1/1/1990:1994
No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_6WD3_0621/1/1669:1674,
1/1/1990:1993
Intercalated tWH
homologous
IL_4WF9_065
IL_28217.1
IL_6WD3_0631/1/1686:1691,
1/1/1696:1702
tSH-tSH-tHH-tHS
homologous
IL_7RQB_068
NA
IL_6WD3_0641/1/1712:1718,
1/1/1742:1746
6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
NA
IL_6WD3_0661/1/1770:1771,
1/1/1980:1982
Single bulged A
homologous
IL_5J7L_312
NA
IL_6WD3_0671/1/1798:1804,
1/1/1813:1821
Kink-turn related
homologous
IL_5J7L_313
NA
IL_6WD3_0681/1/1837:1840,
1/1/1902:1903
Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_6WD3_0691/1/1841:1842,
1/1/1898:1901
Major groove intercalation
homologous
IL_5J7L_315
NA
IL_6WD3_0701/1/1846:1849,
1/1/1893:1894
Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
NA
IL_6WD3_1811/1/1851:1860,
1/1/1882:1891
No text annotation
homologous
IL_5J7L_387
NA
IL_6WD3_1821/1/1864:1867,
1/1/1874:1878
UAA/GAN related
homologous
IL_5J7L_317
NA
IL_6WD3_0721/1/1933:1934,
1/1/1964:1967
Bulged stacked bases
homologous
IL_4WF9_076
IL_24886.1
IL_6WD3_0731/1/1934:1945,
1/1/1961:1964
No text annotation
geometric
IL_4WF9_077
IL_84014.1
IL_6WD3_0741/1/2050:2052,
1/1/2617:2618
Major groove platform
homologous
IL_5J7L_320
NA
IL_6WD3_0751/1/2054:2056,
1/1/2612:2615
No text annotation
homologous
IL_5J7L_321
NA
IL_6WD3_0761/1/2067:2069,
1/1/2442:2443
Single bulged U
homologous
IL_7RQB_080
NA
IL_6WD3_0771/1/2070:2071,
1/1/2438:2441
Minor groove platform
homologous
IL_5J7L_324
NA
IL_6WD3_0781/1/2081:2083,
1/1/2236:2239
Isolated tHS basepair with bulges
homologous
IL_5J7L_325
NA
IL_6WD3_0791/1/2085:2087,
1/1/2232:2234
Isolated non-canonical cWW pair
homologous
IL_5J7L_326
NA
IL_6WD3_0821/1/2202:2204,
1/1/2220:2221
Single bulged U
homologous
IL_5J7L_331
NA
IL_6WD3_0831/1/2350:2353,
1/1/2364:2367
Double sheared
homologous
IL_5J7L_333
NA
IL_6WD3_0841/1/2401:2403,
1/1/2414:2415
No text annotation
geometric
IL_9AXU_122
IL_97561.1
IL_6WD3_0851/1/2453:2454,
1/1/2498:2500
Single stack bend
homologous
IL_4WF9_089
IL_15011.1
IL_6WD3_0861/1/2454:2455,
1/1/2496:2498
Major groove platform
geometric
IL_4V9F_082
IL_48076.7
IL_6WD3_0871/1/2457:2459,
1/1/2493:2494
Major groove platform
homologous
IL_7A0S_085
IL_48076.7
IL_6WD3_0881/1/2459:2461,
1/1/2489:2493
Major groove minor groove platform with extra cWW
geometric
IL_4WF9_092
IL_36931.1
IL_6WD3_0891/1/2466:2470,
1/1/2480:2484
Double sheared with non-canonical cWW
homologous
IL_5J7L_338
NA
IL_6WD3_0901/1/2507:2508,
1/1/2580:2582
Major groove platform
homologous
IL_4WF9_094
IL_46637.1
IL_6WD3_0911/1/2510:2512,
1/1/2574:2578
Isolated non-canonical cWW with bulges
geometric
IL_7RQB_097
NA
IL_6WD3_0921/1/2512:2513,
1/1/2571:2574
No text annotation
homologous
IL_5J7L_341
NA
IL_6WD3_0931/1/2522:2523,
1/1/2540:2543
Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_6WD3_0941/1/2591:2592,
1/1/2601:2603
Single bulged A
homologous
IL_7RQB_101
NA
IL_6WD3_0951/1/2636:2640,
1/1/2774:2782
tSH-tHS-tHW
homologous
IL_5J7L_345
NA
IL_6WD3_0961/1/2652:2658,
1/1/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_7RQB_103
NA
IL_6WD3_0971/1/2680:2684,
1/1/2725:2727
C-loop
homologous
IL_5J7L_347
NA
IL_6WD3_0981/1/2687:2691,
1/1/2718:2722
UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_6WD3_0991/1/2695:2696,
1/1/2711:2714
Multiple bulged bases
homologous
IL_4WF9_103
IL_44609.1
IL_6WD3_1001/1/2737:2742,
1/1/2762:2767
UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_6WD3_1011/1/2806:2811,
1/1/2889:2892
No text annotation
homologous
IL_5J7L_351
NA
IL_6WD3_1021/1/2838:2839,
1/1/2878:2880
Major groove intercalation
homologous
IL_5J7L_352
NA
IL_6WD3_1031/1/2843:2846,
1/1/2870:2874
Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA
IL_6WD3_1041/1/2847:2852,
1/1/2865:2869
tHS double platform
homologous
IL_7RQB_110
NA
IL_6WD3_1051/2/17:18,
1/2/65:67
Major groove intercalation
homologous
IL_4WF9_112
IL_14190.1
IL_6WD3_1071/2/30:31,
1/2/51:54
Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_103
IL_73108.1
IL_6WD3_1081/2/34:38,
1/2/44:48
Symmetric double minor groove platform
geometric
IL_5J7L_358
NA
IL_6WD3_1091/2/71:79,
1/2/97:105
Bacterial 5S Loop E
homologous
IL_5J7L_359
NA
IL_6WD3_1101/3/30:32,
1/3/552:553
Single bulged G
homologous
IL_4LFB_001
IL_28408.1
IL_6WD3_1111/3/44:45,
1/3/396:398
Single bulged A
homologous
IL_5J7L_002
NA
IL_6WD3_1121/3/47:52,
1/3/359:361
No text annotation
geometric
IL_5J7L_003
NA
IL_6WD3_1131/3/54:56,
1/3/356:357
Minor groove platform
homologous
IL_4LFB_004
IL_34520.1
IL_6WD3_1141/3/63:66,
1/3/103:104
Multiple bulged bases
homologous
IL_4LFB_005
IL_71421.1
IL_6WD3_1181/3/128:131,
1/3/231:233
Isolated non-canonical cWW pair
homologous
IL_5J7L_009
NA
IL_6WD3_1191/3/132:136,
1/3/227:230
Minor groove platform related
homologous
IL_5J7L_010
NA
IL_6WD3_1201/3/144:146,
1/3/176:178
Isolated cWH basepair
homologous
IL_5J7L_011
NA
IL_6WD3_1231/3/242:247,
1/3/277:284
Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
NA
IL_6WD3_1251/3/292:293,
1/3/304:308
C-loop
homologous
IL_4LFB_013
IL_06671.1
IL_6WD3_1261/3/367:369,
1/3/392:393
Single bulged U
homologous
IL_5J7L_017
NA
IL_6WD3_1271/3/371:375,
1/3/389:390
C-loop
geometric
IL_5J7L_018
NA
IL_6WD3_1281/3/375:376,
1/3/387:389
Single bulged G
homologous
IL_5J7L_019
NA
IL_6WD3_1321/3/450:455,
1/3/477:483
No text annotation
geometric
IL_5J7L_023
NA
IL_6WD3_1331/3/504:511,
1/3/540:541
SSU/LSU pseudoknot
homologous
IL_5J7L_024
NA
IL_6WD3_1341/3/515:521,
1/3/528:536
Kink-turn related
geometric
IL_4V88_415
NA
IL_6WD3_1351/3/569:575,
1/3/880:881
No text annotation
homologous
IL_4LFB_022
IL_20847.1
IL_6WD3_1361/3/580:584,
1/3/757:761
tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_6WD3_1371/3/594:596,
1/3/644:645
Major groove platform
homologous
IL_5J7L_028
NA
IL_6WD3_1391/3/605:612,
1/3/628:633
No text annotation
homologous
IL_5J7L_030
NA
IL_6WD3_1401/3/654:655,
1/3/751:754
Major groove platform; stack outside cWW
geometric
IL_4LFB_027
IL_74641.1
IL_6WD3_1421/3/662:666,
1/3/740:743
Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_6WD3_1871/3/673:677,
1/3/713:717
Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_71154.1
IL_6WD3_1441/3/684:688,
1/3/699:706
Kink-turn
homologous
IL_5J7L_035
NA
IL_6WD3_1451/3/774:778,
1/3/804:805
Left turn
homologous
IL_5J7L_036
NA
IL_6WD3_1461/3/779:783,
1/3/799:803
tSH-tHW-tHS
homologous
IL_4LFB_033
IL_05821.1
IL_6WD3_1471/3/887:894,
1/3/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_6WD3_1481/3/922:923,
1/3/1393:1395
Single bulged A
homologous
IL_4LFB_035
IL_14190.1
IL_6WD3_1491/3/925:927,
1/3/1390:1391
Single bulged G
homologous
IL_4LFB_036
IL_28408.1
IL_6WD3_1501/3/933:935,
1/3/1380:1384
Minor groove platform
homologous
IL_5J7L_041
NA
IL_6WD3_1511/3/953:954,
1/3/1226:1228
No text annotation
homologous
IL_6CZR_150
NA
IL_6WD3_1521/3/993:997,
1/3/1044:1045
Minor groove platform
geometric
IL_5J7L_043
NA
IL_6WD3_1581/3/1061:1063,
1/3/1193:1195
Isolated non-canonical cWW pair
geometric
IL_5J7L_050
NA
IL_6WD3_1611/3/1158:1161,
1/3/1175:1181
No text annotation
geometric
IL_5J7L_053
NA
IL_6WD3_1901/3/1247:1253,
1/3/1284:1290
No text annotation
homologous
IL_5J7L_054
NA
IL_6WD3_1641/3/1259:1263,
1/3/1272:1276
Double sheared with non-canonical cWW
homologous
IL_5J7L_056
NA
IL_6WD3_1661/3/1399:1401,
1/3/1501:1504
No text annotation
homologous
IL_5J7L_058
NA
IL_6WD3_1671/3/1401:1404,
1/3/1497:1501
No text annotation
geometric
IL_4V88_464
NA
IL_6WD3_1681/3/1405:1407,
1/3/1494:1496
Isolated non-canonical cWW pair
geometric
IL_4ZC7_001
IL_01003.1
IL_6WD3_1691/3/1407:1409,
1/3/1491:1494
No text annotation
IL_6WD3_1701/3/1412:1414,
1/3/1486:1488
Isolated non-canonical cWW pair
homologous
IL_4LFB_059
IL_01003.1
IL_6WD3_1711/3/1416:1419,
1/3/1481:1484
Double sheared
homologous
IL_6CZR_169
NA
IL_6WD3_1721/3/1430:1435,
1/3/1466:1470
Triple sheared related
homologous
IL_5J7L_063
NA

Problematic loops

#loop idProblemSequence
IL_6WD3_009No text annotation
IL_6WD3_010No text annotation
IL_6WD3_026Single bulged G
IL_6WD3_029Double sheared with non-canonical cWW
IL_6WD3_191No text annotation
IL_6WD3_030Tandem non-canonical cWW pairs
IL_6WD3_038Tandem non-canonical cWW pairs
IL_6WD3_177Kink-turn
IL_6WD3_039No text annotation
IL_6WD3_040No text annotation
IL_6WD3_192Major groove platform
IL_6WD3_041Major groove platform with extra cWW
IL_6WD3_178C-loop with extra cWW pair
IL_6WD3_050No text annotation
IL_6WD3_051UAA/GAN
IL_6WD3_056180 degree turn
IL_6WD3_057Single bulged A
IL_6WD3_179Isolated non-canonical cWW pair
IL_6WD3_065Triple sheared
IL_6WD3_071No text annotation
IL_6WD3_080Isolated non-canonical cWW pair
IL_6WD3_081No text annotation
IL_6WD3_193No text annotation
IL_6WD3_183No text annotation
IL_6WD3_184No text annotation
IL_6WD3_185Tandem non-canonical cWW pairs
IL_6WD3_106No text annotation
IL_6WD3_115Minor groove platform with extra cWW
IL_6WD3_116Minor groove platform
IL_6WD3_117Major groove intercalation
IL_6WD3_121tWH-tWH-tHW-tHW
IL_6WD3_122Minor groove platform
IL_6WD3_124No text annotation
IL_6WD3_129No text annotation
IL_6WD3_186No text annotation
IL_6WD3_130No text annotation
IL_6WD3_131tSH-tHW-tWW
IL_6WD3_138Major groove minor groove platform; mini C-loop
IL_6WD3_141Single stack bend
IL_6WD3_143No text annotation
IL_6WD3_153Single stack bend
IL_6WD3_188No text annotation
IL_6WD3_154Single bulged U
IL_6WD3_155Tandem non-canonical cWW pairs
IL_6WD3_189No text annotation
IL_6WD3_156Minor groove platform
IL_6WD3_157Single bulged A
IL_6WD3_159No text annotation
IL_6WD3_160Minor groove platform
IL_6WD3_162No text annotation
IL_6WD3_163180 degree turn
IL_6WD3_165No text annotation
IL_6WD3_173Single bulged A
IL_6WD3_174No text annotation
IL_6WD3_175No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6WD3_0011/1/30:31,
1/1/474:481,
1/1/509:510
No text annotation
homologous
J3_5J7L_036
NA
J3_6WD3_0281/1/30:31,
1/1/474:484,
1/1/496:510
No text annotation
homologous
J3_5J7L_066
NA
J3_6WD3_0291/1/32:35,
1/1/445:461,
1/1/468:473
No text annotation
homologous
J3_5J7L_067
NA
J3_6WD3_0021/1/56:57,
1/1/70:76,
1/1/110:114
No text annotation
homologous
J3_5J7L_037
NA
J3_6WD3_0301/1/297:301,
1/1/316:325,
1/1/337:341
No text annotation
homologous
J3_5J7L_068
NA
J3_6WD3_0031/1/683:689,
1/1/773:775,
1/1/791:794
No text annotation
homologous
J3_7RQB_004
NA
J3_6WD3_0041/1/698:700,
1/1/732:736,
1/1/760:763
No text annotation
homologous
J3_7RQB_005
NA
J3_6WD3_0061/1/1298:1303,
1/1/1625:1627,
1/1/1639:1642
No text annotation
homologous
J3_5J7L_041
NA
J3_6WD3_0071/1/1306:1309,
1/1/1605:1611,
1/1/1620:1622
No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_6WD3_0081/1/1344:1349,
1/1/1382:1385,
1/1/1402:1403
No text annotation
homologous
J3_5J7L_043
NA
J3_6WD3_0321/1/1424:1429,
1/1/1564:1565,
1/1/1568:1574
No text annotation
homologous
J3_5J7L_069
NA
J3_6WD3_0091/1/2091:2093,
1/1/2196:2200,
1/1/2223:2228
Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_6WD3_0331/1/2282:2284,
1/1/2384:2395,
1/1/2421:2427
No text annotation
homologous
J3_5J7L_070
NA
J3_6WD3_0101/1/2295:2299,
1/1/2317:2323,
1/1/2332:2337
No text annotation
J3_6WD3_0111/1/2517:2520,
1/1/2545:2547,
1/1/2561:2567
No text annotation
homologous
J3_5J7L_046
NA
J3_6WD3_0121/1/2789:2791,
1/1/2805:2806,
1/1/2892:2894
No text annotation
homologous
J3_5J7L_047
NA
J3_6WD3_0131/1/2812:2815,
1/1/2831:2836,
1/1/2882:2888
No text annotation
homologous
J3_5J7L_048
NA
J3_6WD3_0141/2/10:16,
1/2/68:70,
1/2/106:110
No text annotation
homologous
J3_5J7L_049
NA
J3_6WD3_0151/3/46:47,
1/3/361:367,
1/3/393:395
No text annotation
homologous
J3_5J7L_001
NA
J3_6WD3_0351/3/46:52,
1/3/359:367,
1/3/393:395
No text annotation
homologous
J3_5J7L_050
NA
J3_6WD3_0161/3/586:588,
1/3/651:654,
1/3/754:755
No text annotation
geometric
J3_4LFB_011
J3_01633.1
J3_6WD3_0361/3/586:588,
1/3/651:655,
1/3/751:755
No text annotation
homologous
J3_5J7L_051
NA
J3_6WD3_0171/3/672:673,
1/3/717:725,
1/3/732:734
No text annotation
homologous
J3_5J7L_003
NA
J3_6WD3_0181/3/826:829,
1/3/857:861,
1/3/868:874
No text annotation
homologous
J3_5J7L_004
NA
J3_6WD3_0191/3/936:939,
1/3/1344:1350,
1/3/1372:1379
No text annotation
homologous
J3_4LFB_002
J3_85722.1
J3_6WD3_0201/3/943:946,
1/3/1235:1237,
1/3/1337:1340
No text annotation
homologous
J3_4LFB_003
J3_44359.1
J3_6WD3_0211/3/955:962,
1/3/973:984,
1/3/1221:1225
No text annotation
homologous
J3_5J7L_006
NA
J3_6WD3_0221/3/990:993,
1/3/1045:1047,
1/3/1210:1215
No text annotation
homologous
J3_5J7L_007
NA
J3_6WD3_0241/3/1063:1068,
1/3/1107:1113,
1/3/1187:1193
No text annotation
homologous
J3_4LFB_007
J3_01343.1
J3_6WD3_0251/3/1073:1074,
1/3/1083:1087,
1/3/1098:1102
No text annotation
homologous
J3_6CZR_024
NA
J3_6WD3_0261/3/1116:1118,
1/3/1155:1158,
1/3/1181:1184
No text annotation
homologous
J3_5J7L_010
NA
J3_6WD3_0371/3/1116:1118,
1/3/1155:1161,
1/3/1175:1184
No text annotation
homologous
J3_5J7L_054
NA
J3_6WD3_0271/3/1237:1241,
1/3/1296:1303,
1/3/1334:1337
No text annotation
homologous
J3_4LFB_009
J3_03192.1
J4_6WD3_0011/1/268:269,
1/1/370:375,
1/1/399:406,
1/1/421:424
No text annotation
homologous
J4_5J7L_018
NA
J4_6WD3_0021/1/601:604,
1/1/624:628,
1/1/635:638,
1/1/650:656
No text annotation
homologous
J4_5J7L_020
NA
J4_6WD3_0031/1/1270:1276,
1/1/1294:1295,
1/1/1645:1648,
1/1/2009:2010
No text annotation
homologous
J4_5J7L_021
NA
J4_6WD3_0041/1/1310:1314,
1/1/1338:1343,
1/1/1404:1405,
1/1/1597:1604
No text annotation
homologous
J4_5J7L_022
NA
J4_6WD3_0051/1/1313:1314,
1/1/1338:1343,
1/1/1404:1405,
1/1/1597:1603
No text annotation
homologous
J4_5J7L_023
NA
J4_6WD3_0061/1/1444:1445,
1/1/1466:1467,
1/1/1525:1526,
1/1/1546:1547
No text annotation
homologous
J4_5J7L_024
NA
J4_6WD3_0071/1/1772:1776,
1/1/1788:1792,
1/1/1827:1830,
1/1/1975:1979
No text annotation
homologous
J4_4WF9_007
J4_61477.6
J4_6WD3_0081/1/1833:1835,
1/1/1905:1906,
1/1/1924:1933,
1/1/1967:1972
No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_6WD3_0091/1/2285:2289,
1/1/2343:2347,
1/1/2370:2372,
1/1/2381:2383
No text annotation
homologous
J4_9DFE_009
J4_98139.1
J4_6WD3_0101/1/2643:2646,
1/1/2674:2676,
1/1/2731:2735,
1/1/2769:2771
No text annotation
homologous
J4_5J7L_028
NA
J4_6WD3_0111/3/115:122,
1/3/239:240,
1/3/286:289,
1/3/311:312
No text annotation
homologous
J4_5J7L_001
NA
J4_6WD3_0131/3/575:577,
1/3/764:769,
1/3/810:821,
1/3/879:880
No text annotation
homologous
J4_5J7L_003
NA
J4_6WD3_0141/5/7:10,
1/5/25:27,
1/5/43:49,
1/5/65:66
tRNA junction
homologous
J4_4WT8_034
NA
J5_6WD3_0011/1/47:54,
1/1/116:121,
1/1/130:131,
1/1/148:150,
1/1/176:178
No text annotation
homologous
J5_5J7L_013
NA
J5_6WD3_0021/1/531:533,
1/1/560:564,
1/1/577:579,
1/1/1261:1262,
1/1/2017:2018
No text annotation
homologous
J5_5J7L_014
NA
J5_6WD3_0031/1/584:589,
1/1/668:671,
1/1/809:812,
1/1/1195:1196,
1/1/1250:1256
No text annotation
homologous
J5_5J7L_015
NA
J5_6WD3_0041/1/1674:1682,
1/1/1706:1707,
1/1/1751:1752,
1/1/1756:1764,
1/1/1988:1990
No text annotation
homologous
J5_5J7L_016
NA
J5_6WD3_0051/1/2057:2064,
1/1/2446:2453,
1/1/2500:2507,
1/1/2582:2588,
1/1/2606:2611
No text annotation
J5_6WD3_0061/1/2074:2077,
1/1/2243:2246,
1/1/2258:2259,
1/1/2281:2282,
1/1/2427:2435
No text annotation
homologous
J5_4WF9_007
J5_39529.2
J5_6WD3_0071/3/36:39,
1/3/403:406,
1/3/436:440,
1/3/497:500,
1/3/545:548
No text annotation
homologous
J5_5J7L_001
NA
J5_6WD3_0081/3/36:39,
1/3/403:406,
1/3/436:442,
1/3/492:500,
1/3/545:548
No text annotation
homologous
J5_5J7L_002
NA
J5_6WD3_0091/3/58:61,
1/3/106:113,
1/3/314:316,
1/3/337:339,
1/3/350:354
No text annotation
homologous
J5_4LFB_002
J5_58574.1
J6_6WD3_0031/1/45:46,
1/1/179:183,
1/1/214:224,
1/1/231:235,
1/1/262:266,
1/1/426:433
No text annotation
J6_6WD3_0021/1/2074:2077,
1/1/2243:2246,
1/1/2258:2259,
1/1/2281:2284,
1/1/2384:2395,
1/1/2421:2435
No text annotation
J7_6WD3_0011/1/8:15,
1/1/525:531,
1/1/2018:2023,
1/1/2040:2043,
1/1/2625:2630,
1/1/2788:2789,
1/1/2894:2895
No text annotation
J7_6WD3_0021/1/817:822,
1/1/835:838,
1/1/940:946,
1/1/971:976,
1/1/987:991,
1/1/1163:1164,
1/1/1185:1190
No text annotation

Problematic loops

#loop idProblemSequence
J3_6WD3_031No text annotation
J3_6WD3_005No text annotation
J3_6WD3_034No text annotation
J3_6WD3_023No text annotation
J4_6WD3_012No text annotation
J4_6WD3_015tRNA junction
J4_6WD3_016tRNA junction
J6_6WD3_001No text annotation

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