HL_6WD5_058

3D structure

PDB id

6WD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases (A, C, G, U)

2406A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WD5_058 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.1497

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.3

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

6WD5|1|1|U|2404
6WD5|1|1|G|2405
6WD5|1|1|A|2406
6WD5|1|1|A|2407
6WD5|1|1|U|2408
6WD5|1|1|G|2409
6WD5|1|1|G|2410
6WD5|1|1|A|2411
6WD5|1|1|A|2412
6WD5|1|1|G|2413

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L15