HL_6WD5_073

3D structure

PDB id

6WD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGGAAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WD5_073 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3744

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6WD5|1|3|U|157
6WD5|1|3|G|158
6WD5|1|3|G|159
6WD5|1|3|A|160
6WD5|1|3|A|161
6WD5|1|3|A|162
6WD5|1|3|C|163
6WD5|1|3|G|164

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain Y

30S ribosomal protein S20