HL_6WD6_004

3D structure

PDB id

6WD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

6WD6|1|1|U|138, 6WD6|1|1|U|139, 6WD6|1|1|C|140

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WD6_004 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.2936

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6WD6|1|1|U|137
6WD6|1|1|U|138
6WD6|1|1|U|139
6WD6|1|1|C|140
6WD6|1|1|G|141
6WD6|1|1|A|142

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L23