HL_6WD7_044

3D structure

PDB id

6WD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

6WD7|1|1|A|1780, 6WD7|1|1|U|1781, 6WD7|1|1|U|1782, 6WD7|1|1|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WD7_044 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.1742

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6WD7|1|1|U|1777
6WD7|1|1|U|1778
6WD7|1|1|U|1779
6WD7|1|1|A|1780
6WD7|1|1|U|1781
6WD7|1|1|U|1782
6WD7|1|1|A|1783
6WD7|1|1|A|1784
6WD7|1|1|A|1785
6WD7|1|1|A|1786
6WD7|1|1|A|1787

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2