HL_6WD8_053

3D structure

PDB id

6WD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6WD8|1|1|A|2268, 6WD8|1|1|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WD8_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1185

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6WD8|1|1|C|2264
6WD8|1|1|U|2265
6WD8|1|1|A|2266
6WD8|1|1|A|2267
6WD8|1|1|A|2268
6WD8|1|1|G|2269
6WD8|1|1|A|2270
6WD8|1|1|G|2271
6WD8|1|1|U|2272
6WD8|1|1|A|2273
6WD8|1|1|A|2274
6WD8|1|1|C|2275
6WD8|1|1|G|2276

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L16

Chain w

50S ribosomal protein L27