HL_6WD9_042

3D structure

PDB id

6WD9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

6WD9|1|1|U|1729, 6WD9|1|1|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WD9_042 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3696

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

6WD9|1|1|C|1727
6WD9|1|1|C|1728
6WD9|1|1|U|1729
6WD9|1|1|C|1730
6WD9|1|1|G|1731
6WD9|1|1|C|1732
6WD9|1|1|G|1733

Current chains

Chain 1

23S ribosomal RNA

Nearby chains