3D structure

PDB id
6WD9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUAAAGAGUAACG
Length
13 nucleotides
Bulged bases
6WD9|1|1|A|2268, 6WD9|1|1|C|2275
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WD9_053 not in the Motif Atlas
Homologous match to HL_7RQB_054
Geometric discrepancy: 0.1207
The information below is about HL_7RQB_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19870.6
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
7

Unit IDs

6WD9|1|1|C|2264
6WD9|1|1|U|2265
6WD9|1|1|A|2266
6WD9|1|1|A|2267
6WD9|1|1|A|2268
6WD9|1|1|G|2269
6WD9|1|1|A|2270
6WD9|1|1|G|2271
6WD9|1|1|U|2272
6WD9|1|1|A|2273
6WD9|1|1|A|2274
6WD9|1|1|C|2275
6WD9|1|1|G|2276

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain m
50S ribosomal protein L16
Chain w
50S ribosomal protein L27

Coloring options:


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