HL_6WD9_076

3D structure

PDB id

6WD9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

6WD9|1|3|G|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WD9_076 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1277

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6WD9|1|3|G|259
6WD9|1|3|G|260
6WD9|1|3|U|261
6WD9|1|3|A|262
6WD9|1|3|A|263
6WD9|1|3|C|264
6WD9|1|3|G|265
6WD9|1|3|G|266
6WD9|1|3|C|267

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain V

30S ribosomal protein S17

Chain Y

30S ribosomal protein S20