HL_6WDA_024

3D structure

PDB id

6WDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCAUCCCGA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDA_024 not in the Motif Atlas

Geometric match to HL_6CZR_215

Geometric discrepancy: 0.3757

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

6WDA|1|1|U|884
6WDA|1|1|C|885
6WDA|1|1|A|886
6WDA|1|1|U|887
6WDA|1|1|C|888
6WDA|1|1|C|889
6WDA|1|1|C|890
6WDA|1|1|G|891
6WDA|1|1|A|892

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S13

Chain X

30S ribosomal protein S19