3D structure

PDB id
6WDA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
6WDA|1|1|C|1870
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WDA_046 not in the Motif Atlas
Homologous match to HL_5J7L_180
Geometric discrepancy: 0.4098
The information below is about HL_5J7L_180
Detailed Annotation
GNRA variation
Broad Annotation
GNRA variation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

6WDA|1|1|C|1868
6WDA|1|1|G|1869
6WDA|1|1|C|1870
6WDA|1|1|A|1871
6WDA|1|1|A|1872
6WDA|1|1|G|1873

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain a
50S ribosomal protein L1

Coloring options:


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