HL_6WDA_049

3D structure

PDB id

6WDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6WDA|1|1|A|2030, 6WDA|1|1|A|2031, 6WDA|1|1|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDA_049 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1312

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6WDA|1|1|G|2027
6WDA|1|1|U|2028
6WDA|1|1|G|2029
6WDA|1|1|A|2030
6WDA|1|1|A|2031
6WDA|1|1|G|2032
6WDA|1|1|A|2033
6WDA|1|1|U|2034
6WDA|1|1|G|2035
6WDA|1|1|C|2036

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain c

50S ribosomal protein L3

Chain r

50S ribosomal protein L21