HL_6WDA_055
3D structure
- PDB id
- 6WDA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGCAAUGG
- Length
- 8 nucleotides
- Bulged bases
- 6WDA|1|1|G|2325, 6WDA|1|1|C|2326
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WDA_055 not in the Motif Atlas
- Homologous match to HL_5J7L_189
- Geometric discrepancy: 0.1629
- The information below is about HL_5J7L_189
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
6WDA|1|1|U|2324
6WDA|1|1|G|2325
6WDA|1|1|C|2326
6WDA|1|1|A|2327
6WDA|1|1|A|2328
6WDA|1|1|U|2329
6WDA|1|1|G|2330
6WDA|1|1|G|2331
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain e
- 50S ribosomal protein L5
- Chain m
- 50S ribosomal protein L16
- Chain w
- 50S ribosomal protein L27
Coloring options: