HL_6WDA_058

3D structure

PDB id

6WDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

6WDA|1|1|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDA_058 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.1285

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6WDA|1|1|U|2404
6WDA|1|1|G|2405
6WDA|1|1|A|2406
6WDA|1|1|A|2407
6WDA|1|1|U|2408
6WDA|1|1|G|2409
6WDA|1|1|G|2410
6WDA|1|1|A|2411
6WDA|1|1|A|2412
6WDA|1|1|G|2413

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L15