HL_6WDA_106
3D structure
- PDB id
- 6WDA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 6WDA|1|6|G|18, 6WDA|1|6|G|19, 6WDA|1|6|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WDA_106 not in the Motif Atlas
- Homologous match to HL_5B63_003
- Geometric discrepancy: 0.1756
- The information below is about HL_5B63_003
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
6WDA|1|6|C|13
6WDA|1|6|A|14
6WDA|1|6|G|15
6WDA|1|6|C|16
6WDA|1|6|C|17
6WDA|1|6|U|17|||A
6WDA|1|6|G|18
6WDA|1|6|G|19
6WDA|1|6|U|20
6WDA|1|6|A|21
6WDA|1|6|G|22
Current chains
- Chain 6
- tRNAfMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- 50S ribosomal protein L1
Coloring options: