HL_6WDB_035

3D structure

PDB id

6WDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

6WDB|1|1|A|1453, 6WDB|1|1|C|1454, 6WDB|1|1|U|1460

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDB_035 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3215

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6WDB|1|1|G|1450
6WDB|1|1|C|1451
6WDB|1|1|G|1452
6WDB|1|1|A|1453
6WDB|1|1|C|1454
6WDB|1|1|G|1455
6WDB|1|1|G|1456
6WDB|1|1|U|1457
6WDB|1|1|U|1458
6WDB|1|1|G|1459
6WDB|1|1|U|1460
6WDB|1|1|C|1461

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17