6WDB Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6WDB_006 | 1/1/194:201 | No text annotation | geometric HL_4WF9_006 HL_48677.1 | |
| HL_6WDB_007 | 1/1/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_6WDB_010 | 1/1/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_6WDB_013 | 1/1/462:467 | GNRA | homologous HL_4WF9_015 HL_34789.2 | |
| HL_6WDB_016 | 1/1/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 NA | |
| HL_6WDB_021 | 1/1/744:753 | No text annotation | homologous HL_4WF9_023 HL_50204.1 | |
| HL_6WDB_022 | 1/1/779:785 | No text annotation | geometric HL_7A0S_007 HL_51020.2 | |
| HL_6WDB_026 | 1/1/978:985 | No text annotation | homologous HL_7A0S_027 HL_47171.1 | |
| HL_6WDB_032 | 1/1/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_6WDB_033 | 1/1/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_6WDB_034 | 1/1/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_6WDB_038 | 1/1/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_90436.2 | |
| HL_6WDB_039 | 1/1/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_6WDB_040 | 1/1/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_6WDB_041 | 1/1/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_6WDB_044 | 1/1/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_87681.1 | |
| HL_6WDB_049 | 1/1/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_6WDB_051 | 1/1/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_6WDB_053 | 1/1/2264:2276 | No text annotation | homologous HL_5J7L_187 NA | |
| HL_6WDB_058 | 1/1/2404:2413 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_6WDB_062 | 1/1/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6WDB_064 | 1/1/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_6WDB_067 | 1/1/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_6WDB_113 | 1/3/12:22 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_6WDB_085 | 1/3/689:698 | No text annotation | homologous HL_6CZR_086 NA | |
| HL_6WDB_087 | 1/3/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.2 | |
| HL_6WDB_091 | 1/3/963:972 | No text annotation | homologous HL_5J7L_021 NA | |
| HL_6WDB_101 | 1/3/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_6WDB_109 | 1/7/31:39 | tRNA anticodon loop | homologous HL_5IBB_210 HL_81376.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6WDB_001 | No text annotation | ||
| HL_6WDB_002 | No text annotation | ||
| HL_6WDB_003 | No text annotation | ||
| HL_6WDB_004 | No text annotation | ||
| HL_6WDB_005 | No text annotation | ||
| HL_6WDB_008 | No text annotation | ||
| HL_6WDB_009 | T-loop with 2 stacked bulged bases | ||
| HL_6WDB_011 | No text annotation | ||
| HL_6WDB_012 | Pseudoknot geometry | ||
| HL_6WDB_014 | GNRA | ||
| HL_6WDB_015 | Mini UNCG with extended bulge | ||
| HL_6WDB_017 | No text annotation | ||
| HL_6WDB_018 | GNRA | ||
| HL_6WDB_019 | GNRA wlth extra near cWW | ||
| HL_6WDB_111 | No text annotation | ||
| HL_6WDB_020 | GNRA wlth tandem sheared | ||
| HL_6WDB_023 | No text annotation | ||
| HL_6WDB_024 | No text annotation | ||
| HL_6WDB_025 | GNRA | ||
| HL_6WDB_027 | No text annotation | ||
| HL_6WDB_028 | GNRA wlth tandem sheared | ||
| HL_6WDB_029 | No text annotation | ||
| HL_6WDB_030 | GNRA | ||
| HL_6WDB_031 | T-loop with 2 stacked bulged bases | ||
| HL_6WDB_035 | No text annotation | ||
| HL_6WDB_036 | Pseudoknot geometry with 3' bulge | ||
| HL_6WDB_037 | UNCG | ||
| HL_6WDB_112 | No text annotation | ||
| HL_6WDB_042 | No text annotation | ||
| HL_6WDB_043 | No text annotation | ||
| HL_6WDB_045 | GNRA related | ||
| HL_6WDB_046 | GNRA variation | ||
| HL_6WDB_047 | No text annotation | ||
| HL_6WDB_048 | No text annotation | ||
| HL_6WDB_050 | No text annotation | ||
| HL_6WDB_052 | No text annotation | ||
| HL_6WDB_054 | No text annotation | ||
| HL_6WDB_055 | Pseudoknot geometry | ||
| HL_6WDB_056 | GNRA | ||
| HL_6WDB_057 | GNRA | ||
| HL_6WDB_059 | No text annotation | ||
| HL_6WDB_060 | No text annotation | ||
| HL_6WDB_061 | No text annotation | ||
| HL_6WDB_063 | GNRA | ||
| HL_6WDB_065 | No text annotation | ||
| HL_6WDB_066 | UNCG variation | ||
| HL_6WDB_068 | GNRA | ||
| HL_6WDB_069 | No text annotation | ||
| HL_6WDB_070 | Mini UNCG | ||
| HL_6WDB_071 | No text annotation | ||
| HL_6WDB_072 | No text annotation | ||
| HL_6WDB_073 | GNRA | ||
| HL_6WDB_074 | GNRA | ||
| HL_6WDB_075 | No text annotation | ||
| HL_6WDB_076 | GNRA related | ||
| HL_6WDB_077 | GNRA with extra cWW | ||
| HL_6WDB_114 | GNRA | ||
| HL_6WDB_078 | No text annotation | ||
| HL_6WDB_079 | UNCG | ||
| HL_6WDB_080 | GNRA | ||
| HL_6WDB_081 | UNCG | ||
| HL_6WDB_082 | GNRA wlth extra near cWW | ||
| HL_6WDB_083 | No text annotation | ||
| HL_6WDB_084 | GNRA-like with tWH | ||
| HL_6WDB_086 | GNRA | ||
| HL_6WDB_088 | Externally structured | ||
| HL_6WDB_089 | GNRA | ||
| HL_6WDB_090 | GNRA | ||
| HL_6WDB_092 | GNRA | ||
| HL_6WDB_093 | GNRA | ||
| HL_6WDB_094 | T-loop related | ||
| HL_6WDB_095 | No text annotation | ||
| HL_6WDB_096 | GNRA | ||
| HL_6WDB_097 | GNRA | ||
| HL_6WDB_098 | T-loop with 3 stacked bulged bases | ||
| HL_6WDB_099 | No text annotation | ||
| HL_6WDB_100 | UNCG | ||
| HL_6WDB_102 | tRNA D-loop | ||
| HL_6WDB_103 | tRNA anticodon loop | ||
| HL_6WDB_104 | T-loop with 2 stacked bulged bases | ||
| HL_6WDB_105 | No text annotation | ||
| HL_6WDB_106 | tRNA anticodon loop | ||
| HL_6WDB_107 | T-loop with 2 stacked bulged bases | ||
| HL_6WDB_108 | No text annotation | ||
| HL_6WDB_110 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6WDB_006 | 1/1/188:194, 1/1/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_6WDB_007 | 1/1/239:245, 1/1/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_6WDB_013 | 1/1/564:566, 1/1/575:577 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_71625.2 | |
| IL_6WDB_015 | 1/1/672:674, 1/1/806:808 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_01003.2 | |
| IL_6WDB_016 | 1/1/674:678, 1/1/799:806 | tHW-tHW cross-strand stack | homologous IL_5J7L_260 NA | |
| IL_6WDB_017 | 1/1/697:698, 1/1/763:765 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_6WDB_018 | 1/1/702:703, 1/1/728:730 | Single bulged G | geometric IL_4V9F_026 IL_28408.2 | |
| IL_6WDB_020 | 1/1/738:740, 1/1/757:758 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_6WDB_021 | 1/1/775:777, 1/1/787:791 | Multiple bulged bases | geometric IL_5J7L_265 NA | |
| IL_6WDB_024 | 1/1/850:851, 1/1/926:928 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_6WDB_031 | 1/1/994:996, 1/1/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_6WDB_032 | 1/1/998:1002, 1/1/1153:1157 | UAA/GAN | homologous IL_5J7L_277 NA | |
| IL_6WDB_033 | 1/1/1004:1011, 1/1/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_6WDB_034 | 1/1/1011:1013, 1/1/1149:1150 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_6WDB_035 | 1/1/1018:1024, 1/1/1140:1144 | Kink-turn related | homologous IL_5J7L_280 NA | |
| IL_6WDB_036 | 1/1/1024:1030, 1/1/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_6WDB_044 | 1/1/1208:1215, 1/1/1234:1238 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_6WDB_045 | 1/1/1262:1269, 1/1/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_6WDB_047 | 1/1/1319:1323, 1/1/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
| IL_6WDB_048 | 1/1/1351:1355, 1/1/1376:1380 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_6WDB_049 | 1/1/1357:1361, 1/1/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_6WDB_053 | 1/1/1437:1440, 1/1/1551:1555 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_6WDB_059 | 1/1/1651:1656, 1/1/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_6WDB_061 | 1/1/1666:1669, 1/1/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_6WDB_181 | 1/1/1666:1674, 1/1/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_6WDB_062 | 1/1/1669:1674, 1/1/1990:1993 | Intercalated tWH | homologous IL_4WF9_065 IL_28217.1 | |
| IL_6WDB_063 | 1/1/1686:1691, 1/1/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6WDB_067 | 1/1/1770:1771, 1/1/1980:1982 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_6WDB_068 | 1/1/1798:1804, 1/1/1813:1821 | Kink-turn related | homologous IL_5J7L_313 NA | |
| IL_6WDB_070 | 1/1/1841:1842, 1/1/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_6WDB_074 | 1/1/1934:1945, 1/1/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_6WDB_075 | 1/1/2050:2052, 1/1/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_6WDB_076 | 1/1/2054:2056, 1/1/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_6WDB_078 | 1/1/2070:2071, 1/1/2438:2441 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_6WDB_079 | 1/1/2081:2083, 1/1/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_6WDB_084 | 1/1/2350:2353, 1/1/2364:2367 | Double sheared | homologous IL_4WF9_087 IL_58355.2 | |
| IL_6WDB_090 | 1/1/2466:2470, 1/1/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_6WDB_095 | 1/1/2591:2592, 1/1/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_6WDB_096 | 1/1/2636:2640, 1/1/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_6WDB_098 | 1/1/2680:2684, 1/1/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
| IL_6WDB_099 | 1/1/2687:2691, 1/1/2718:2722 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_6WDB_100 | 1/1/2695:2696, 1/1/2711:2714 | Multiple bulged bases | homologous IL_4WF9_103 IL_44609.2 | |
| IL_6WDB_104 | 1/1/2843:2846, 1/1/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_6WDB_110 | 1/2/71:79, 1/2/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA | |
| IL_6WDB_113 | 1/3/47:52, 1/3/359:361 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_6WDB_136 | 1/3/569:575, 1/3/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_6WDB_146 | 1/3/774:778, 1/3/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_6WDB_173 | 1/3/1416:1419, 1/3/1481:1484 | Double sheared | homologous IL_6CZR_169 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6WDB_001 | Triple sheared with non-canonical cWW | ||
| IL_6WDB_002 | Single bulged A | ||
| IL_6WDB_003 | Minor groove platform | ||
| IL_6WDB_004 | Kink-turn | ||
| IL_6WDB_005 | Single stack bend | ||
| IL_6WDB_008 | No text annotation | ||
| IL_6WDB_191 | No text annotation | ||
| IL_6WDB_009 | No text annotation | ||
| IL_6WDB_010 | No text annotation | ||
| IL_6WDB_011 | No text annotation | ||
| IL_6WDB_012 | Double sheared | ||
| IL_6WDB_014 | AAA cross-strand stack | ||
| IL_6WDB_019 | Triple sheared | ||
| IL_6WDB_022 | 90 degree turn | ||
| IL_6WDB_177 | No text annotation | ||
| IL_6WDB_023 | Stack outside cWW | ||
| IL_6WDB_025 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6WDB_026 | Single bulged G | ||
| IL_6WDB_027 | C-loop with bulged stacked A's | ||
| IL_6WDB_028 | Isolated non-canonical cWW pair | ||
| IL_6WDB_029 | Double sheared with non-canonical cWW | ||
| IL_6WDB_192 | No text annotation | ||
| IL_6WDB_030 | Tandem non-canonical cWW pairs | ||
| IL_6WDB_037 | Isolated non-canonical cWW pair | ||
| IL_6WDB_038 | Tandem non-canonical cWW pairs | ||
| IL_6WDB_178 | Kink-turn | ||
| IL_6WDB_039 | No text annotation | ||
| IL_6WDB_040 | No text annotation | ||
| IL_6WDB_041 | No text annotation | ||
| IL_6WDB_042 | Isolated cWS basepair | ||
| IL_6WDB_043 | No text annotation | ||
| IL_6WDB_046 | Major groove platform; stack outside cWW | ||
| IL_6WDB_050 | No text annotation | ||
| IL_6WDB_051 | UAA/GAN | ||
| IL_6WDB_052 | Tandem non-canonical cWW pairs | ||
| IL_6WDB_054 | No text annotation | ||
| IL_6WDB_055 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6WDB_179 | tSH-tHW-tHS | ||
| IL_6WDB_056 | 180 degree turn | ||
| IL_6WDB_057 | Single bulged A | ||
| IL_6WDB_193 | UAA/GAN variation | ||
| IL_6WDB_058 | Triple sheared related | ||
| IL_6WDB_180 | No text annotation | ||
| IL_6WDB_060 | Isolated tWW turn | ||
| IL_6WDB_064 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6WDB_065 | Triple sheared | ||
| IL_6WDB_066 | Single bulged C | ||
| IL_6WDB_069 | Minor groove platform, major groove intercalation | ||
| IL_6WDB_071 | Major groove minor groove platform; mini C-loop | ||
| IL_6WDB_182 | No text annotation | ||
| IL_6WDB_072 | No text annotation | ||
| IL_6WDB_183 | UAA/GAN related | ||
| IL_6WDB_073 | Bulged stacked bases | ||
| IL_6WDB_077 | Single bulged U | ||
| IL_6WDB_080 | Isolated non-canonical cWW pair | ||
| IL_6WDB_081 | Isolated non-canonical cWW pair | ||
| IL_6WDB_082 | No text annotation | ||
| IL_6WDB_194 | No text annotation | ||
| IL_6WDB_184 | No text annotation | ||
| IL_6WDB_185 | No text annotation | ||
| IL_6WDB_083 | Single bulged U | ||
| IL_6WDB_085 | No text annotation | ||
| IL_6WDB_086 | Single stack bend | ||
| IL_6WDB_087 | Major groove platform | ||
| IL_6WDB_088 | Major groove platform | ||
| IL_6WDB_186 | No text annotation | ||
| IL_6WDB_089 | No text annotation | ||
| IL_6WDB_091 | Major groove platform | ||
| IL_6WDB_092 | Isolated non-canonical cWW with bulges | ||
| IL_6WDB_093 | No text annotation | ||
| IL_6WDB_094 | Major groove platform with intercalation | ||
| IL_6WDB_097 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6WDB_101 | UAA/GAN with extra cWW | ||
| IL_6WDB_102 | No text annotation | ||
| IL_6WDB_103 | Major groove intercalation | ||
| IL_6WDB_105 | tHS double platform | ||
| IL_6WDB_106 | Major groove intercalation | ||
| IL_6WDB_107 | No text annotation | ||
| IL_6WDB_108 | Major groove minor groove platform; mini C-loop | ||
| IL_6WDB_109 | Symmetric double minor groove platform | ||
| IL_6WDB_111 | Single bulged G | ||
| IL_6WDB_112 | Single bulged A | ||
| IL_6WDB_114 | Minor groove platform | ||
| IL_6WDB_115 | Multiple bulged bases | ||
| IL_6WDB_116 | Minor groove platform with extra cWW | ||
| IL_6WDB_117 | Minor groove platform | ||
| IL_6WDB_118 | Major groove intercalation | ||
| IL_6WDB_119 | Isolated non-canonical cWW pair | ||
| IL_6WDB_120 | Minor groove platform related | ||
| IL_6WDB_121 | Isolated cWH basepair | ||
| IL_6WDB_122 | tWH-tWH-tHW-tHW | ||
| IL_6WDB_123 | Minor groove platform | ||
| IL_6WDB_124 | Kink-turn with non-sequential stacking | ||
| IL_6WDB_125 | No text annotation | ||
| IL_6WDB_187 | No text annotation | ||
| IL_6WDB_126 | C-loop | ||
| IL_6WDB_127 | Single bulged U | ||
| IL_6WDB_128 | C-loop | ||
| IL_6WDB_129 | Single bulged G | ||
| IL_6WDB_130 | No text annotation | ||
| IL_6WDB_131 | No text annotation | ||
| IL_6WDB_132 | tSH-tHW-tWW | ||
| IL_6WDB_133 | No text annotation | ||
| IL_6WDB_134 | SSU/LSU pseudoknot | ||
| IL_6WDB_135 | Kink-turn related | ||
| IL_6WDB_137 | tSH-tHW-tHS | ||
| IL_6WDB_138 | Major groove platform | ||
| IL_6WDB_139 | Major groove minor groove platform; mini C-loop | ||
| IL_6WDB_140 | No text annotation | ||
| IL_6WDB_141 | Major groove platform; stack outside cWW | ||
| IL_6WDB_142 | Single stack bend | ||
| IL_6WDB_143 | Tandem non-canonical cWW pairs | ||
| IL_6WDB_188 | Triple non-canonical cWW pairs | ||
| IL_6WDB_144 | No text annotation | ||
| IL_6WDB_145 | Kink-turn | ||
| IL_6WDB_147 | tSH-tHW-tHS | ||
| IL_6WDB_148 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_6WDB_149 | Single bulged A | ||
| IL_6WDB_150 | Single bulged G | ||
| IL_6WDB_151 | Minor groove platform | ||
| IL_6WDB_152 | No text annotation | ||
| IL_6WDB_153 | Minor groove platform | ||
| IL_6WDB_154 | Single stack bend | ||
| IL_6WDB_155 | No text annotation | ||
| IL_6WDB_156 | Single bulged U | ||
| IL_6WDB_157 | Isolated cWS basepair | ||
| IL_6WDB_158 | Minor groove platform | ||
| IL_6WDB_159 | Single bulged A | ||
| IL_6WDB_160 | Isolated non-canonical cWW pair | ||
| IL_6WDB_161 | No text annotation | ||
| IL_6WDB_162 | Minor groove platform | ||
| IL_6WDB_163 | No text annotation | ||
| IL_6WDB_164 | No text annotation | ||
| IL_6WDB_189 | No text annotation | ||
| IL_6WDB_165 | 180 degree turn | ||
| IL_6WDB_166 | Double sheared with non-canonical cWW | ||
| IL_6WDB_167 | No text annotation | ||
| IL_6WDB_168 | No text annotation | ||
| IL_6WDB_169 | No text annotation | ||
| IL_6WDB_170 | Isolated non-canonical cWW pair | ||
| IL_6WDB_171 | Decoding loop related | ||
| IL_6WDB_190 | Isolated non-canonical cWW pair | ||
| IL_6WDB_172 | Tandem non-canonical cWW pairs | ||
| IL_6WDB_174 | Triple sheared related | ||
| IL_6WDB_175 | Single bulged A | ||
| IL_6WDB_176 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6WDB_028 | 1/1/32:35, 1/1/445:461, 1/1/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_6WDB_036 | 1/1/297:301, 1/1/316:325, 1/1/337:341 | No text annotation | homologous J3_5J7L_068 NA | |
| J3_6WDB_003 | 1/1/683:689, 1/1/773:775, 1/1/791:794 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_6WDB_004 | 1/1/698:700, 1/1/732:736, 1/1/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6WDB_006 | 1/1/1298:1303, 1/1/1625:1627, 1/1/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_6WDB_007 | 1/1/1306:1309, 1/1/1605:1611, 1/1/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_6WDB_008 | 1/1/1344:1349, 1/1/1382:1385, 1/1/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_6WDB_009 | 1/1/2091:2093, 1/1/2196:2200, 1/1/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_6WDB_031 | 1/1/2282:2284, 1/1/2384:2395, 1/1/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_6WDB_010 | 1/1/2295:2299, 1/1/2317:2323, 1/1/2332:2337 | No text annotation | ||
| J3_6WDB_011 | 1/1/2517:2520, 1/1/2545:2547, 1/1/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_6WDB_013 | 1/1/2812:2815, 1/1/2831:2836, 1/1/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_6WDB_032 | 1/3/46:52, 1/3/359:367, 1/3/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_6WDB_016 | 1/3/586:588, 1/3/651:654, 1/3/754:755 | No text annotation | geometric J3_5J7L_002 NA | |
| J3_6WDB_033 | 1/3/586:588, 1/3/651:655, 1/3/751:755 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_6WDB_017 | 1/3/672:673, 1/3/717:725, 1/3/732:734 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_6WDB_026 | 1/3/1237:1241, 1/3/1296:1303, 1/3/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J4_6WDB_001 | 1/1/268:269, 1/1/370:375, 1/1/399:406, 1/1/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_6WDB_003 | 1/1/1270:1276, 1/1/1294:1295, 1/1/1645:1648, 1/1/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_6WDB_007 | 1/1/1772:1776, 1/1/1788:1792, 1/1/1827:1830, 1/1/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_6WDB_008 | 1/1/1833:1835, 1/1/1905:1906, 1/1/1924:1933, 1/1/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_6WDB_013 | 1/3/575:577, 1/3/764:769, 1/3/810:821, 1/3/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J5_6WDB_001 | 1/1/47:54, 1/1/116:121, 1/1/130:131, 1/1/148:150, 1/1/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_6WDB_002 | 1/1/531:533, 1/1/560:564, 1/1/577:579, 1/1/1261:1262, 1/1/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_6WDB_003 | 1/1/584:589, 1/1/668:671, 1/1/809:812, 1/1/1195:1196, 1/1/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_6WDB_004 | 1/1/1674:1682, 1/1/1706:1707, 1/1/1751:1752, 1/1/1756:1764, 1/1/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_6WDB_006 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2282, 1/1/2427:2435 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_6WDB_002 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2284, 1/1/2384:2395, 1/1/2421:2435 | No text annotation | ||
| J7_6WDB_001 | 1/1/8:15, 1/1/525:531, 1/1/2018:2023, 1/1/2040:2043, 1/1/2625:2630, 1/1/2788:2789, 1/1/2894:2895 | No text annotation | ||
| J7_6WDB_002 | 1/1/817:822, 1/1/835:838, 1/1/940:946, 1/1/971:976, 1/1/987:991, 1/1/1163:1164, 1/1/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6WDB_001 | No text annotation | ||
| J3_6WDB_027 | No text annotation | ||
| J3_6WDB_002 | No text annotation | ||
| J3_6WDB_029 | No text annotation | ||
| J3_6WDB_005 | No text annotation | ||
| J3_6WDB_030 | No text annotation | ||
| J3_6WDB_012 | No text annotation | ||
| J3_6WDB_014 | No text annotation | ||
| J3_6WDB_015 | No text annotation | ||
| J3_6WDB_018 | No text annotation | ||
| J3_6WDB_019 | No text annotation | ||
| J3_6WDB_020 | No text annotation | ||
| J3_6WDB_021 | No text annotation | ||
| J3_6WDB_022 | No text annotation | ||
| J3_6WDB_034 | No text annotation | ||
| J3_6WDB_023 | No text annotation | ||
| J3_6WDB_037 | No text annotation | ||
| J3_6WDB_024 | No text annotation | ||
| J3_6WDB_025 | No text annotation | ||
| J3_6WDB_035 | No text annotation | ||
| J4_6WDB_002 | No text annotation | ||
| J4_6WDB_004 | No text annotation | ||
| J4_6WDB_005 | No text annotation | ||
| J4_6WDB_006 | No text annotation | ||
| J4_6WDB_009 | No text annotation | ||
| J4_6WDB_010 | No text annotation | ||
| J4_6WDB_011 | No text annotation | ||
| J4_6WDB_012 | No text annotation | ||
| J4_6WDB_014 | tRNA junction | ||
| J4_6WDB_015 | tRNA junction | ||
| J4_6WDB_016 | tRNA junction | ||
| J5_6WDB_005 | No text annotation | ||
| J5_6WDB_007 | No text annotation | ||
| J5_6WDB_008 | No text annotation | ||
| J5_6WDB_009 | No text annotation | ||
| J6_6WDB_001 | No text annotation |
Coloring options: