HL_6WDB_065

3D structure

PDB id

6WDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6WDB|1|1|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDB_065 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1358

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6WDB|1|1|C|2745
6WDB|1|1|U|2746
6WDB|1|1|G|2747
6WDB|1|1|A|2748
6WDB|1|1|A|2749
6WDB|1|1|A|2750
6WDB|1|1|G|2751
6WDB|1|1|C|2752
6WDB|1|1|A|2753
6WDB|1|1|U|2754
6WDB|1|1|C|2755
6WDB|1|1|U|2756
6WDB|1|1|A|2757
6WDB|1|1|A|2758
6WDB|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13