HL_6WDB_082

3D structure

PDB id

6WDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6WDB|1|3|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDB_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1625

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6WDB|1|3|G|462
6WDB|1|3|U|463
6WDB|1|3|U|464
6WDB|1|3|A|465
6WDB|1|3|A|466
6WDB|1|3|U|467
6WDB|1|3|A|468
6WDB|1|3|C|469
6WDB|1|3|C|470

Current chains

Chain 3

16S ribosomal RNA

Nearby chains