3D structure

PDB id
6WDB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CAGUCGGUAG
Length
10 nucleotides
Bulged bases
6WDB|1|7|U|16, 6WDB|1|7|C|17, 6WDB|1|7|G|18, 6WDB|1|7|G|19, 6WDB|1|7|U|20
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WDB_108 not in the Motif Atlas
Homologous match to HL_3WFS_001
Geometric discrepancy: 0.2049
The information below is about HL_3WFS_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6WDB|1|7|C|13
6WDB|1|7|A|14
6WDB|1|7|G|15
6WDB|1|7|U|16
6WDB|1|7|C|17
6WDB|1|7|G|18
6WDB|1|7|G|19
6WDB|1|7|U|20
6WDB|1|7|A|21
6WDB|1|7|G|22

Current chains

Chain 7
tRNAPhe

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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