HL_6WDC_006

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6WDC|1|1|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDC_006 not in the Motif Atlas

Homologous match to HL_7RQB_006

Geometric discrepancy: 0.1306

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

6WDC|1|1|G|194
6WDC|1|1|A|195
6WDC|1|1|A|196
6WDC|1|1|A|197
6WDC|1|1|C|198
6WDC|1|1|A|199
6WDC|1|1|U|200
6WDC|1|1|C|201

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L15

Chain x

50S ribosomal protein L28