RNA 3D Hub //

6WDC Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6WDC_0031/1/123:128No text annotation
homologous
HL_5J7L_136
NA
HL_6WDC_0061/1/194:201No text annotation
homologous
HL_7RQB_006
NA
HL_6WDC_0081/1/246:252No text annotation
homologous
HL_5J7L_141
NA
HL_6WDC_0091/1/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
NA
HL_6WDC_0111/1/382:392No text annotation
homologous
HL_5J7L_145
NA
HL_6WDC_0121/1/410:417Pseudoknot geometry
homologous
HL_7A0S_014
HL_30680.4
HL_6WDC_0131/1/462:467GNRA
homologous
HL_4WF9_015
HL_34789.1
HL_6WDC_0141/1/487:493GNRA
homologous
HL_5J7L_148
NA
HL_6WDC_0161/1/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
NA
HL_6WDC_0171/1/611:617No text annotation
homologous
HL_5J7L_151
NA
HL_6WDC_0191/1/641:647No text annotation
homologous
HL_5J7L_153
NA
HL_6WDC_0211/1/744:753No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_6WDC_0221/1/779:785No text annotation
geometric
HL_7A0S_007
HL_51020.1
HL_6WDC_0231/1/826:831No text annotation
homologous
HL_7A0S_024
HL_27530.1
HL_6WDC_0251/1/955:962GNRA
homologous
HL_7A0S_026
HL_34789.1
HL_6WDC_0261/1/978:985No text annotation
homologous
HL_7A0S_027
HL_47171.1
HL_6WDC_0311/1/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_6WDC_0321/1/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_6WDC_0331/1/1363:1368GNRA
homologous
HL_5J7L_167
NA
HL_6WDC_0341/1/1389:1398No text annotation
homologous
HL_7RQB_036
NA
HL_6WDC_0381/1/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_90436.1
HL_6WDC_0391/1/1612:1619No text annotation
homologous
HL_4WF9_038
HL_28592.1
HL_6WDC_0401/1/1630:1636GNRA
homologous
HL_5J7L_174
NA
HL_6WDC_0411/1/1691:1696No text annotation
homologous
HL_7RQB_042
NA
HL_6WDC_0441/1/1777:1787No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_6WDC_0451/1/1806:1811GNRA related
homologous
HL_5J7L_179
NA
HL_6WDC_0481/1/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_6WDC_0491/1/2027:2036No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_6WDC_0511/1/2209:2215No text annotation
homologous
HL_5J7L_185
NA
HL_6WDC_0531/1/2264:2276No text annotation
homologous
HL_4WF9_050
HL_02042.1
HL_6WDC_0551/1/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
NA
HL_6WDC_0561/1/2356:2361GNRA
homologous
HL_5J7L_190
NA
HL_6WDC_0571/1/2374:2379GNRA
homologous
HL_4WF9_054
HL_34789.1
HL_6WDC_0611/1/2551:2557No text annotation
homologous
HL_5J7L_195
NA
HL_6WDC_0621/1/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_6WDC_0641/1/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
NA
HL_6WDC_0651/1/2745:2759No text annotation
homologous
HL_4WF9_062
HL_53269.1
HL_6WDC_0671/1/2819:2827No text annotation
homologous
HL_5J7L_201
NA
HL_6WDC_0681/1/2856:2861GNRA
homologous
HL_5J7L_202
NA
HL_6WDC_0711/3/12:22No text annotation
homologous
HL_5J7L_001
NA
HL_6WDC_0771/3/296:301GNRA
homologous
HL_5J7L_007
NA
HL_6WDC_0781/3/320:333No text annotation
homologous
HL_6CZR_079
NA
HL_6WDC_0861/3/726:731GNRA
homologous
HL_5J7L_016
NA
HL_6WDC_0871/3/786:796No text annotation
homologous
HL_4LFB_017
HL_38491.1
HL_6WDC_0891/3/862:867GNRA
homologous
HL_5J7L_019
NA
HL_6WDC_0901/3/897:902GNRA
homologous
HL_4LFB_020
HL_34789.1
HL_6WDC_0911/3/963:972No text annotation
homologous
HL_5J7L_021
NA
HL_6WDC_0931/3/1076:1081GNRA
homologous
HL_5J7L_023
NA
HL_6WDC_1011/3/1515:1520GNRA
homologous
HL_6CZR_103
NA

Problematic loops

#loop idProblemSequence
HL_6WDC_001No text annotation
HL_6WDC_002No text annotation
HL_6WDC_004No text annotation
HL_6WDC_005No text annotation
HL_6WDC_111No text annotation
HL_6WDC_007No text annotation
HL_6WDC_010T-loop with unstacked turn
HL_6WDC_015Mini UNCG with extended bulge
HL_6WDC_018GNRA
HL_6WDC_020GNRA wlth tandem sheared
HL_6WDC_024No text annotation
HL_6WDC_027Externally structured
HL_6WDC_028GNRA wlth tandem sheared
HL_6WDC_029No text annotation
HL_6WDC_030GNRA
HL_6WDC_035No text annotation
HL_6WDC_036Pseudoknot geometry with 3' bulge
HL_6WDC_037UNCG
HL_6WDC_042No text annotation
HL_6WDC_043No text annotation
HL_6WDC_046GNRA variation
HL_6WDC_047No text annotation
HL_6WDC_050No text annotation
HL_6WDC_052No text annotation
HL_6WDC_054No text annotation
HL_6WDC_058tRNA anticodon loop
HL_6WDC_112No text annotation
HL_6WDC_059No text annotation
HL_6WDC_060No text annotation
HL_6WDC_063GNRA
HL_6WDC_066UNCG variation
HL_6WDC_069No text annotation
HL_6WDC_070Mini UNCG
HL_6WDC_072No text annotation
HL_6WDC_073GNRA
HL_6WDC_074GNRA
HL_6WDC_075No text annotation
HL_6WDC_076GNRA related
HL_6WDC_079UNCG
HL_6WDC_080GNRA
HL_6WDC_081UNCG
HL_6WDC_082GNRA wlth extra near cWW
HL_6WDC_083No text annotation
HL_6WDC_084No text annotation
HL_6WDC_085No text annotation
HL_6WDC_088Externally structured
HL_6WDC_092GNRA
HL_6WDC_094T-loop related
HL_6WDC_095No text annotation
HL_6WDC_096GNRA
HL_6WDC_097GNRA
HL_6WDC_098T-loop with 3 stacked bulged bases
HL_6WDC_099No text annotation
HL_6WDC_100UNCG
HL_6WDC_102tRNA D-loop
HL_6WDC_103tRNA anticodon loop
HL_6WDC_104T-loop with 2 stacked bulged bases
HL_6WDC_105No text annotation
HL_6WDC_106tRNA anticodon loop
HL_6WDC_107T-loop with 2 stacked bulged bases
HL_6WDC_108tRNA D-loop
HL_6WDC_109tRNA anticodon loop
HL_6WDC_110T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6WDC_0011/1/24:30,
1/1/510:516		Triple sheared with non-canonical cWW
homologous
IL_4WF9_001
IL_22311.1
IL_6WDC_0021/1/36:37,
1/1/442:444		Single bulged A
homologous
IL_7A0S_002
IL_14190.1
IL_6WDC_0051/1/183:184,
1/1/212:214		Single stack bend
homologous
IL_7A0S_005
IL_15011.1
IL_6WDC_0061/1/188:194,
1/1/201:208		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_006
NA
IL_6WDC_0071/1/239:245,
1/1/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
NA
IL_6WDC_0101/1/293:295,
1/1/343:347		No text annotation
homologous
IL_5J7L_254
NA
IL_6WDC_0111/1/481:484,
1/1/496:509		No text annotation
homologous
IL_5J7L_255
NA
IL_6WDC_0121/1/536:539,
1/1/554:557		Double sheared
homologous
IL_5J7L_256
NA
IL_6WDC_0131/1/564:566,
1/1/575:577		Isolated non-canonical cWW pair
homologous
IL_5J7L_257
NA
IL_6WDC_0141/1/606:610,
1/1/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
NA
IL_6WDC_0151/1/672:674,
1/1/806:808		Isolated non-canonical cWW pair
geometric
IL_4LFB_010
IL_01003.1
IL_6WDC_0161/1/674:678,
1/1/799:806		tHW-tHW cross-strand stack
homologous
IL_5J7L_260
NA
IL_6WDC_0171/1/697:698,
1/1/763:765		Single bulged A
homologous
IL_5J7L_261
NA
IL_6WDC_0181/1/702:703,
1/1/728:730		Single bulged G
geometric
IL_4V9F_026
IL_28408.1
IL_6WDC_0201/1/738:740,
1/1/757:758		Major groove platform
homologous
IL_4WF9_026
IL_48076.7
IL_6WDC_0211/1/775:777,
1/1/787:791		Multiple bulged bases
homologous
IL_7RQB_023
NA
IL_6WDC_0221/1/837:838,
1/1/940:942		Single stack bend
homologous
IL_5J7L_266
NA
IL_6WDC_0261/1/856:862,
1/1/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
NA
IL_6WDC_0281/1/864:868,
1/1/909:912		C-loop with bulged stacked A's
homologous
IL_5J7L_272
NA
IL_6WDC_0321/1/994:996,
1/1/1159:1160		Single bulged C
homologous
IL_4WF9_035
IL_05642.1
IL_6WDC_0331/1/998:1002,
1/1/1153:1157		UAA/GAN
homologous
IL_4WF9_036
IL_08938.1
IL_6WDC_0361/1/1018:1024,
1/1/1140:1144		Kink-turn related
homologous
IL_5J7L_280
NA
IL_6WDC_0371/1/1024:1030,
1/1/1124:1140		No text annotation
geometric
IL_5J7L_281
NA
IL_6WDC_0431/1/1196:1198,
1/1/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
NA
IL_6WDC_0451/1/1208:1215,
1/1/1234:1238		Kink-turn
homologous
IL_5J7L_288
NA
IL_6WDC_0461/1/1262:1269,
1/1/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_6WDC_0471/1/1310:1313,
1/1/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_6WDC_0491/1/1351:1355,
1/1/1376:1380		UAA/GAN
homologous
IL_5J7L_292
NA
IL_6WDC_0501/1/1357:1361,
1/1/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_6WDC_0531/1/1432:1435,
1/1/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_6WDC_0541/1/1437:1440,
1/1/1551:1555		tSH-tHW
homologous
IL_5J7L_297
NA
IL_6WDC_0551/1/1468:1471,
1/1/1520:1524		No text annotation
homologous
IL_5J7L_299
NA
IL_6WDC_1931/1/1526:1529,
1/1/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
NA
IL_6WDC_0601/1/1651:1656,
1/1/2004:2006		No text annotation
homologous
IL_5J7L_304
NA
IL_6WDC_0611/1/1663:1665,
1/1/1995:1997		Isolated tWW turn
homologous
IL_5J7L_305
NA
IL_6WDC_0621/1/1666:1669,
1/1/1993:1994		Major groove platform; stack outside cWW
geometric
IL_4WF9_064
IL_74641.1
IL_6WDC_1791/1/1666:1674,
1/1/1990:1994		No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_6WDC_0631/1/1669:1674,
1/1/1990:1993		Intercalated tWH
homologous
IL_4WF9_065
IL_28217.1
IL_6WDC_0641/1/1686:1691,
1/1/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
NA
IL_6WDC_0671/1/1770:1771,
1/1/1980:1982		Single bulged A
homologous
IL_5J7L_312
NA
IL_6WDC_0681/1/1798:1804,
1/1/1813:1821		Kink-turn related
homologous
IL_5J7L_313
NA
IL_6WDC_0701/1/1841:1842,
1/1/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_6WDC_1801/1/1851:1860,
1/1/1882:1891		No text annotation
homologous
IL_5J7L_387
NA
IL_6WDC_1811/1/1864:1867,
1/1/1874:1878		UAA/GAN related
homologous
IL_5J7L_317
NA
IL_6WDC_0731/1/1933:1934,
1/1/1964:1967		Bulged stacked bases
geometric
IL_4WF9_076
IL_24886.1
IL_6WDC_0741/1/1934:1945,
1/1/1961:1964		No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_6WDC_0751/1/2050:2052,
1/1/2617:2618		Major groove platform
homologous
IL_5J7L_320
NA
IL_6WDC_0761/1/2054:2056,
1/1/2612:2615		No text annotation
homologous
IL_5J7L_321
NA
IL_6WDC_0771/1/2067:2069,
1/1/2442:2443		Single bulged U
homologous
IL_7RQB_080
NA
IL_6WDC_0781/1/2070:2071,
1/1/2438:2441		Minor groove platform
homologous
IL_7RQB_081
NA
IL_6WDC_0791/1/2081:2083,
1/1/2236:2239		Isolated tHS basepair with bulges
homologous
IL_4WF9_082
IL_87316.1
IL_6WDC_0801/1/2085:2087,
1/1/2232:2234		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
NA
IL_6WDC_0841/1/2350:2353,
1/1/2364:2367		Double sheared
homologous
IL_4WF9_087
IL_58355.1
IL_6WDC_0901/1/2466:2470,
1/1/2480:2484		Double sheared with non-canonical cWW
homologous
IL_5J7L_338
NA
IL_6WDC_0911/1/2507:2508,
1/1/2580:2582		Major groove platform
homologous
IL_4WF9_094
IL_46637.1
IL_6WDC_0921/1/2510:2512,
1/1/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_7RQB_097
NA
IL_6WDC_0941/1/2522:2523,
1/1/2540:2543		Major groove platform with intercalation
homologous
IL_7RQB_099
NA
IL_6WDC_0951/1/2591:2592,
1/1/2601:2603		Single bulged A
homologous
IL_7RQB_101
NA
IL_6WDC_0961/1/2636:2640,
1/1/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
NA
IL_6WDC_0981/1/2680:2684,
1/1/2725:2727		C-loop
homologous
IL_7A0S_095
IL_63596.12
IL_6WDC_0991/1/2687:2691,
1/1/2718:2722		UAA/GAN related, with intercalation
homologous
IL_4WF9_102
IL_82016.1
IL_6WDC_1001/1/2695:2696,
1/1/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_6WDC_1021/1/2806:2811,
1/1/2889:2892		No text annotation
homologous
IL_5J7L_351
NA
IL_6WDC_1041/1/2843:2846,
1/1/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA
IL_6WDC_1051/1/2847:2852,
1/1/2865:2869		tHS double platform
homologous
IL_7RQB_110
NA
IL_6WDC_1101/3/30:32,
1/3/552:553		Single bulged G
homologous
IL_4LFB_001
IL_28408.1
IL_6WDC_1111/3/44:45,
1/3/396:398		Single bulged A
homologous
IL_5J7L_002
NA
IL_6WDC_1121/3/47:52,
1/3/359:361		No text annotation
geometric
IL_5J7L_003
NA
IL_6WDC_1131/3/54:56,
1/3/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_34520.1
IL_6WDC_1231/3/242:247,
1/3/277:284		Kink-turn with non-sequential stacking
homologous
IL_4LFB_011
IL_46174.4
IL_6WDC_1331/3/504:511,
1/3/540:541		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_11411.1
IL_6WDC_1351/3/569:575,
1/3/880:881		No text annotation
homologous
IL_6CZR_134
NA
IL_6WDC_1361/3/580:584,
1/3/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_6WDC_1421/3/662:666,
1/3/740:743		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_6WDC_1871/3/684:688,
1/3/699:706		Kink-turn
homologous
IL_5J7L_035
NA
IL_6WDC_1881/3/774:778,
1/3/804:805		Left turn
homologous
IL_4LFB_032
IL_29346.3
IL_6WDC_1461/3/779:783,
1/3/799:803		tSH-tHW-tHS
geometric
IL_4LFB_033
IL_05821.1
IL_6WDC_1471/3/887:894,
1/3/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_84044.1
IL_6WDC_1481/3/922:923,
1/3/1393:1395		Single bulged A
homologous
IL_5J7L_039
NA
IL_6WDC_1681/3/1401:1404,
1/3/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_6WDC_1691/3/1405:1407,
1/3/1494:1496		Isolated non-canonical cWW pair
geometric
IL_5VCI_002
IL_01003.1
IL_6WDC_1701/3/1407:1409,
1/3/1491:1494		Decoding loop related
geometric
IL_3C3Z_002
IL_29925.1
IL_6WDC_1721/3/1416:1419,
1/3/1481:1484		Double sheared
homologous
IL_6CZR_169
NA
IL_6WDC_1731/3/1430:1435,
1/3/1466:1470		Triple sheared related
homologous
IL_5J7L_063
NA

Problematic loops

#loop idProblemSequence
IL_6WDC_003Minor groove platform
IL_6WDC_004Kink-turn
IL_6WDC_008No text annotation
IL_6WDC_192No text annotation
IL_6WDC_009No text annotation
IL_6WDC_019Triple sheared
IL_6WDC_02390 degree turn
IL_6WDC_024Multiple bulged bases
IL_6WDC_025Single stack bend
IL_6WDC_027Single bulged G
IL_6WDC_029Isolated non-canonical cWW pair
IL_6WDC_030Double sheared with non-canonical cWW
IL_6WDC_031No text annotation
IL_6WDC_034SSU/LSU pseudoknot
IL_6WDC_035Single bulged U
IL_6WDC_038Isolated non-canonical cWW pair
IL_6WDC_039Tandem non-canonical cWW pairs
IL_6WDC_040Kink-turn
IL_6WDC_041No text annotation
IL_6WDC_042No text annotation
IL_6WDC_176No text annotation
IL_6WDC_044No text annotation
IL_6WDC_048C-loop
IL_6WDC_051No text annotation
IL_6WDC_052UAA/GAN
IL_6WDC_0565x5 Sarcin-Ricin with intercalated A; G-bulge
IL_6WDC_177tSH-tHW-tHS
IL_6WDC_057180 degree turn
IL_6WDC_058Single bulged A
IL_6WDC_059Triple sheared related
IL_6WDC_178No text annotation
IL_6WDC_0656x5 Sarcin-Ricin; G-bulge
IL_6WDC_066Triple sheared
IL_6WDC_069Minor groove platform, major groove intercalation
IL_6WDC_071Major groove minor groove platform; mini C-loop
IL_6WDC_072No text annotation
IL_6WDC_081Tandem non-canonical cWW pairs
IL_6WDC_194Isolated non-canonical cWW pair
IL_6WDC_082No text annotation
IL_6WDC_182No text annotation
IL_6WDC_083Single bulged U
IL_6WDC_085No text annotation
IL_6WDC_086Single stack bend
IL_6WDC_087Major groove platform
IL_6WDC_088Major groove platform with extra pair
IL_6WDC_183Major groove platform
IL_6WDC_089Major groove minor groove platform with extra cWW
IL_6WDC_093No text annotation
IL_6WDC_097Sarcin-Ricin target in LSU H95; G-bulge
IL_6WDC_101UAA/GAN with extra cWW
IL_6WDC_103Major groove intercalation
IL_6WDC_106Major groove intercalation
IL_6WDC_107No text annotation
IL_6WDC_108Major groove minor groove platform; mini C-loop
IL_6WDC_109Bacterial 5S Loop E
IL_6WDC_114Multiple bulged bases
IL_6WDC_115Minor groove platform with extra cWW
IL_6WDC_116Minor groove platform
IL_6WDC_195Single bulged G
IL_6WDC_117No text annotation
IL_6WDC_118Isolated non-canonical cWW pair
IL_6WDC_119No text annotation
IL_6WDC_120Isolated cWH basepair
IL_6WDC_121tWH-tWH-tHW-tHW
IL_6WDC_122Minor groove platform
IL_6WDC_124No text annotation
IL_6WDC_184No text annotation
IL_6WDC_125C-loop
IL_6WDC_126Single bulged U
IL_6WDC_127C-loop
IL_6WDC_128Single bulged G
IL_6WDC_129No text annotation
IL_6WDC_130No text annotation
IL_6WDC_131tSH-tHW-tWW
IL_6WDC_132No text annotation
IL_6WDC_134Kink-turn related
IL_6WDC_185No text annotation
IL_6WDC_137Major groove platform
IL_6WDC_138Major groove minor groove platform; mini C-loop
IL_6WDC_139No text annotation
IL_6WDC_140Major groove platform; stack outside cWW
IL_6WDC_141Single stack bend
IL_6WDC_186Triple non-canonical cWW pairs
IL_6WDC_143No text annotation
IL_6WDC_144Kink-turn
IL_6WDC_145Other IL
IL_6WDC_149Single bulged G
IL_6WDC_150Minor groove platform
IL_6WDC_151No text annotation
IL_6WDC_152Minor groove platform
IL_6WDC_153Single stack bend
IL_6WDC_154No text annotation
IL_6WDC_155Single bulged U
IL_6WDC_156Isolated cWS basepair
IL_6WDC_189Minor groove platform
IL_6WDC_157No text annotation
IL_6WDC_158Single bulged A
IL_6WDC_159Isolated non-canonical cWW pair
IL_6WDC_160No text annotation
IL_6WDC_161Minor groove platform
IL_6WDC_162No text annotation
IL_6WDC_163No text annotation
IL_6WDC_190No text annotation
IL_6WDC_164180 degree turn
IL_6WDC_165Double sheared with non-canonical cWW
IL_6WDC_166No text annotation
IL_6WDC_167No text annotation
IL_6WDC_191Isolated non-canonical cWW pair
IL_6WDC_171Tandem non-canonical cWW pairs
IL_6WDC_174Single bulged A
IL_6WDC_175No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6WDC_0011/1/30:31,
1/1/474:481,
1/1/509:510		No text annotation
homologous
J3_7RQB_001
NA
J3_6WDC_0271/1/30:31,
1/1/474:484,
1/1/496:510		No text annotation
homologous
J3_5J7L_066
NA
J3_6WDC_0281/1/32:35,
1/1/445:461,
1/1/468:473		No text annotation
homologous
J3_5J7L_067
NA
J3_6WDC_0021/1/56:57,
1/1/70:76,
1/1/110:114		No text annotation
homologous
J3_5J7L_037
NA
J3_6WDC_0031/1/683:689,
1/1/773:775,
1/1/791:794		No text annotation
homologous
J3_5J7L_038
NA
J3_6WDC_0041/1/698:700,
1/1/732:736,
1/1/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_6WDC_0061/1/1298:1303,
1/1/1625:1627,
1/1/1639:1642		No text annotation
homologous
J3_5J7L_041
NA
J3_6WDC_0071/1/1306:1309,
1/1/1605:1611,
1/1/1620:1622		No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_6WDC_0081/1/1344:1349,
1/1/1382:1385,
1/1/1402:1403		No text annotation
homologous
J3_5J7L_043
NA
J3_6WDC_0301/1/1424:1429,
1/1/1564:1565,
1/1/1568:1574		No text annotation
homologous
J3_5J7L_069
NA
J3_6WDC_0091/1/2091:2093,
1/1/2196:2200,
1/1/2223:2228		Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_6WDC_0311/1/2282:2284,
1/1/2384:2395,
1/1/2421:2427		No text annotation
homologous
J3_5J7L_070
NA
J3_6WDC_0111/1/2517:2520,
1/1/2545:2547,
1/1/2561:2567		No text annotation
homologous
J3_4WF9_009
J3_32601.6
J3_6WDC_0131/1/2812:2815,
1/1/2831:2836,
1/1/2882:2888		No text annotation
homologous
J3_5J7L_048
NA
J3_6WDC_0151/3/46:47,
1/3/361:367,
1/3/393:395		No text annotation
homologous
J3_5J7L_001
NA
J3_6WDC_0321/3/46:52,
1/3/359:367,
1/3/393:395		No text annotation
homologous
J3_5J7L_050
NA
J3_6WDC_0171/3/672:673,
1/3/717:725,
1/3/732:734		No text annotation
homologous
J3_5J7L_003
NA
J3_6WDC_0181/3/826:829,
1/3/857:861,
1/3/868:874		No text annotation
homologous
J3_5J7L_004
NA
J3_6WDC_0201/3/943:946,
1/3/1235:1237,
1/3/1337:1340		No text annotation
homologous
J3_5J7L_005
NA
J3_6WDC_0231/3/1063:1068,
1/3/1107:1113,
1/3/1187:1193		No text annotation
homologous
J3_4LFB_007
J3_01343.1
J3_6WDC_0261/3/1237:1241,
1/3/1296:1303,
1/3/1334:1337		No text annotation
homologous
J3_4LFB_009
J3_03192.1
J4_6WDC_0011/1/268:269,
1/1/370:375,
1/1/399:406,
1/1/421:424		No text annotation
homologous
J4_5J7L_018
NA
J4_6WDC_0021/1/601:604,
1/1/624:628,
1/1/635:638,
1/1/650:656		No text annotation
homologous
J4_5J7L_020
NA
J4_6WDC_0031/1/1270:1276,
1/1/1294:1295,
1/1/1645:1648,
1/1/2009:2010		No text annotation
homologous
J4_5J7L_021
NA
J4_6WDC_0041/1/1310:1314,
1/1/1338:1343,
1/1/1404:1405,
1/1/1597:1604		No text annotation
homologous
J4_5J7L_022
NA
J4_6WDC_0051/1/1313:1314,
1/1/1338:1343,
1/1/1404:1405,
1/1/1597:1603		No text annotation
homologous
J4_5J7L_023
NA
J4_6WDC_0061/1/1444:1445,
1/1/1466:1467,
1/1/1525:1526,
1/1/1546:1547		No text annotation
homologous
J4_5J7L_024
NA
J4_6WDC_0071/1/1772:1776,
1/1/1788:1792,
1/1/1827:1830,
1/1/1975:1979		No text annotation
homologous
J4_5J7L_025
NA
J4_6WDC_0081/1/1833:1835,
1/1/1905:1906,
1/1/1924:1933,
1/1/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_6WDC_0091/1/2285:2289,
1/1/2343:2347,
1/1/2370:2372,
1/1/2381:2383		No text annotation
homologous
J4_9DFE_009
J4_98139.1
J4_6WDC_0101/1/2643:2646,
1/1/2674:2676,
1/1/2731:2735,
1/1/2769:2771		No text annotation
homologous
J4_5J7L_028
NA
J4_6WDC_0131/3/575:577,
1/3/764:769,
1/3/810:821,
1/3/879:880		No text annotation
homologous
J4_5J7L_003
NA
J5_6WDC_0011/1/47:54,
1/1/116:121,
1/1/130:131,
1/1/148:150,
1/1/176:178		No text annotation
homologous
J5_5J7L_013
NA
J5_6WDC_0021/1/531:533,
1/1/560:564,
1/1/577:579,
1/1/1261:1262,
1/1/2017:2018		No text annotation
homologous
J5_5J7L_014
NA
J5_6WDC_0031/1/584:589,
1/1/668:671,
1/1/809:812,
1/1/1195:1196,
1/1/1250:1256		No text annotation
homologous
J5_5J7L_015
NA
J5_6WDC_0041/1/1674:1682,
1/1/1706:1707,
1/1/1751:1752,
1/1/1756:1764,
1/1/1988:1990		No text annotation
homologous
J5_5J7L_016
NA
J5_6WDC_0051/1/2057:2064,
1/1/2446:2453,
1/1/2500:2507,
1/1/2582:2588,
1/1/2606:2611		No text annotation
J5_6WDC_0061/1/2074:2077,
1/1/2243:2246,
1/1/2258:2259,
1/1/2281:2282,
1/1/2427:2435		No text annotation
homologous
J5_7A0S_007
J5_39529.2
J5_6WDC_0091/3/58:61,
1/3/106:113,
1/3/314:316,
1/3/337:339,
1/3/350:354		No text annotation
homologous
J5_6CZR_021
NA
J6_6WDC_0011/1/45:46,
1/1/179:183,
1/1/214:224,
1/1/231:235,
1/1/262:266,
1/1/426:433		No text annotation
J6_6WDC_0021/1/2074:2077,
1/1/2243:2246,
1/1/2258:2259,
1/1/2281:2284,
1/1/2384:2395,
1/1/2421:2435		No text annotation
J7_6WDC_0011/1/8:15,
1/1/525:531,
1/1/2018:2023,
1/1/2040:2043,
1/1/2625:2630,
1/1/2788:2789,
1/1/2894:2895		No text annotation
J7_6WDC_0021/1/817:822,
1/1/835:838,
1/1/940:946,
1/1/971:976,
1/1/987:991,
1/1/1163:1164,
1/1/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_6WDC_037No text annotation
J3_6WDC_029No text annotation
J3_6WDC_005No text annotation
J3_6WDC_010No text annotation
J3_6WDC_012No text annotation
J3_6WDC_014No text annotation
J3_6WDC_016No text annotation
J3_6WDC_033No text annotation
J3_6WDC_019No text annotation
J3_6WDC_021No text annotation
J3_6WDC_034No text annotation
J3_6WDC_022No text annotation
J3_6WDC_035No text annotation
J3_6WDC_038No text annotation
J3_6WDC_024No text annotation
J3_6WDC_025No text annotation
J3_6WDC_036No text annotation
J4_6WDC_011No text annotation
J4_6WDC_017No text annotation
J4_6WDC_012No text annotation
J4_6WDC_014tRNA junction
J4_6WDC_015tRNA junction
J4_6WDC_016Virus junction
J5_6WDC_007No text annotation
J5_6WDC_008No text annotation

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