HL_6WDC_016

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

6WDC|1|1|A|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDC_016 not in the Motif Atlas

Geometric match to HL_5J7L_150

Geometric discrepancy: 0.1625

The information below is about HL_5J7L_150

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6WDC|1|1|U|566
6WDC|1|1|U|567
6WDC|1|1|U|568
6WDC|1|1|U|569
6WDC|1|1|G|570
6WDC|1|1|U|571
6WDC|1|1|A|572
6WDC|1|1|U|573
6WDC|1|1|A|574
6WDC|1|1|A|575

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain c

50S ribosomal protein L3

Chain l

50S ribosomal protein L15

Chain q

50S ribosomal protein L20

Chain r

50S ribosomal protein L21