HL_6WDC_032

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases (A, C, G, U)

1325U, 1329U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDC_032 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.2108

The information below is about HL_5J7L_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

30

Unit IDs

6WDC|1|1|G|1324
6WDC|1|1|U|1325
6WDC|1|1|U|1326
6WDC|1|1|A|1327
6WDC|1|1|A|1328
6WDC|1|1|U|1329
6WDC|1|1|C|1330

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain s

50S ribosomal protein L22