3D structure

PDB id
6WDC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CUAAAGAGUAACG
Length
13 nucleotides
Bulged bases
6WDC|1|1|A|2268, 6WDC|1|1|C|2275
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WDC_053 not in the Motif Atlas
Homologous match to HL_4WF9_050
Geometric discrepancy: 0.1559
The information below is about HL_4WF9_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_91939.2
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
8

Unit IDs

6WDC|1|1|C|2264
6WDC|1|1|U|2265
6WDC|1|1|A|2266
6WDC|1|1|A|2267
6WDC|1|1|A|2268
6WDC|1|1|G|2269
6WDC|1|1|A|2270
6WDC|1|1|G|2271
6WDC|1|1|U|2272
6WDC|1|1|A|2273
6WDC|1|1|A|2274
6WDC|1|1|C|2275
6WDC|1|1|G|2276

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain m
50S ribosomal protein L16
Chain w
50S ribosomal protein L27

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.283 s