HL_6WDC_057

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDC_057 not in the Motif Atlas

Homologous match to HL_4WF9_054

Geometric discrepancy: 0.151

The information below is about HL_4WF9_054

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_85603.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

284

Unit IDs

6WDC|1|1|C|2374
6WDC|1|1|G|2375
6WDC|1|1|A|2376
6WDC|1|1|A|2377
6WDC|1|1|A|2378
6WDC|1|1|G|2379

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain o

50S ribosomal protein L18

Chain w

50S ribosomal protein L27