HL_6WDC_065

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6WDC|1|1|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDC_065 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1779

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6WDC|1|1|C|2745
6WDC|1|1|U|2746
6WDC|1|1|G|2747
6WDC|1|1|A|2748
6WDC|1|1|A|2749
6WDC|1|1|A|2750
6WDC|1|1|G|2751
6WDC|1|1|C|2752
6WDC|1|1|A|2753
6WDC|1|1|U|2754
6WDC|1|1|C|2755
6WDC|1|1|U|2756
6WDC|1|1|A|2757
6WDC|1|1|A|2758
6WDC|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13