HL_6WDC_083

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDC_083 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.2413

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6WDC|1|3|C|522
6WDC|1|3|A|523
6WDC|1|3|G|524
6WDC|1|3|C|525
6WDC|1|3|C|526
6WDC|1|3|G|527

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 4

mRNA

Chain Q

30S ribosomal protein S12