HL_6WDC_102
3D structure
- PDB id
- 6WDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 6WDC|1|5|G|18, 6WDC|1|5|G|19, 6WDC|1|5|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WDC_102 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.2332
- The information below is about HL_1QF6_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25462.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 23
Unit IDs
6WDC|1|5|C|13
6WDC|1|5|A|14
6WDC|1|5|G|15
6WDC|1|5|C|16
6WDC|1|5|C|17
6WDC|1|5|U|17|||A
6WDC|1|5|G|18
6WDC|1|5|G|19
6WDC|1|5|U|20
6WDC|1|5|A|21
6WDC|1|5|G|22
Current chains
- Chain 5
- tRNAfMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 6
- Transfer RNA; tRNA
- Chain C
- 50S ribosomal protein L33
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