HL_6WDE_028

3D structure

PDB id

6WDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDE_028 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.2362

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

6WDE|1|1|C|1092
6WDE|1|1|G|1093
6WDE|1|1|U|1094
6WDE|1|1|A|1095
6WDE|1|1|A|1096
6WDE|1|1|U|1097
6WDE|1|1|A|1098
6WDE|1|1|G|1099

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain i

50S ribosomal protein L11