HL_6WDF_083

3D structure

PDB id

6WDF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDF_083 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.204

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6WDF|1|3|C|522
6WDF|1|3|A|523
6WDF|1|3|G|524
6WDF|1|3|C|525
6WDF|1|3|C|526
6WDF|1|3|G|527

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S12