HL_6WDG_039

3D structure

PDB id

6WDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6WDG|1|1|A|1614, 6WDG|1|1|A|1616, 6WDG|1|1|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDG_039 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.0907

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

6WDG|1|1|C|1612
6WDG|1|1|G|1613
6WDG|1|1|A|1614
6WDG|1|1|C|1615
6WDG|1|1|A|1616
6WDG|1|1|C|1617
6WDG|1|1|A|1618
6WDG|1|1|G|1619

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain s

50S ribosomal protein L22