3D structure

PDB id
6WDG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CGACACAG
Length
8 nucleotides
Bulged bases
6WDG|1|1|A|1614, 6WDG|1|1|A|1616, 6WDG|1|1|A|1618
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WDG_039 not in the Motif Atlas
Homologous match to HL_4WF9_038
Geometric discrepancy: 0.0907
The information below is about HL_4WF9_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_28592.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
11

Unit IDs

6WDG|1|1|C|1612
6WDG|1|1|G|1613
6WDG|1|1|A|1614
6WDG|1|1|C|1615
6WDG|1|1|A|1616
6WDG|1|1|C|1617
6WDG|1|1|A|1618
6WDG|1|1|G|1619

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L34
Chain s
50S ribosomal protein L22

Coloring options:


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