HL_6WDH_024

3D structure

PDB id

6WDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UCAUCCCGA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDH_024 not in the Motif Atlas

Homologous match to HL_5J7L_158

Geometric discrepancy: 0.4362

The information below is about HL_5J7L_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDH|1|1|U|884
6WDH|1|1|C|885
6WDH|1|1|A|886
6WDH|1|1|U|887
6WDH|1|1|C|888
6WDH|1|1|C|889
6WDH|1|1|C|890
6WDH|1|1|G|891
6WDH|1|1|A|892

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S13