6WDH Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6WDH_002 | 1/1/87:95 | No text annotation | homologous HL_5J7L_135 NA | |
| HL_6WDH_003 | 1/1/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_6WDH_006 | 1/1/194:201 | No text annotation | homologous HL_4WF9_006 HL_48677.1 | |
| HL_6WDH_007 | 1/1/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_6WDH_008 | 1/1/246:252 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_6WDH_011 | 1/1/382:392 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_6WDH_013 | 1/1/462:467 | GNRA | homologous HL_4WF9_015 HL_34789.2 | |
| HL_6WDH_014 | 1/1/487:493 | GNRA | homologous HL_5J7L_148 NA | |
| HL_6WDH_016 | 1/1/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 NA | |
| HL_6WDH_018 | 1/1/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_6WDH_021 | 1/1/744:753 | No text annotation | homologous HL_4WF9_023 HL_50204.1 | |
| HL_6WDH_111 | 1/1/779:785 | No text annotation | geometric HL_361D_002 NA | |
| HL_6WDH_023 | 1/1/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_6WDH_025 | 1/1/955:962 | GNRA | homologous HL_4WF9_027 HL_34789.2 | |
| HL_6WDH_026 | 1/1/978:985 | No text annotation | homologous HL_7A0S_027 HL_47171.1 | |
| HL_6WDH_030 | 1/1/1222:1227 | GNRA | homologous HL_5J7L_164 NA | |
| HL_6WDH_031 | 1/1/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_6WDH_032 | 1/1/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_6WDH_033 | 1/1/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_6WDH_035 | 1/1/1450:1461 | No text annotation | geometric HL_2ZZM_002 HL_33487.1 | |
| HL_6WDH_038 | 1/1/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_6WDH_039 | 1/1/1612:1619 | No text annotation | homologous HL_4WF9_038 HL_28592.1 | |
| HL_6WDH_041 | 1/1/1691:1696 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_6WDH_044 | 1/1/1777:1787 | No text annotation | homologous HL_4WF9_043 HL_87681.1 | |
| HL_6WDH_048 | 1/1/1949:1957 | No text annotation | homologous HL_4WF9_046 HL_61418.2 | |
| HL_6WDH_049 | 1/1/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_6WDH_051 | 1/1/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_6WDH_055 | 1/1/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_6WDH_058 | 1/1/2404:2413 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_6WDH_062 | 1/1/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_6WDH_064 | 1/1/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_6WDH_067 | 1/1/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_6WDH_069 | 1/2/38:44 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_6WDH_071 | 1/3/12:22 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_6WDH_083 | 1/3/522:527 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_6WDH_087 | 1/3/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.2 | |
| HL_6WDH_089 | 1/3/862:867 | GNRA | homologous HL_5J7L_019 NA | |
| HL_6WDH_091 | 1/3/963:972 | No text annotation | homologous HL_5J7L_021 NA | |
| HL_6WDH_093 | 1/3/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
| HL_6WDH_101 | 1/3/1515:1520 | GNRA | homologous HL_6CZR_103 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6WDH_001 | No text annotation | ||
| HL_6WDH_004 | No text annotation | ||
| HL_6WDH_005 | No text annotation | ||
| HL_6WDH_009 | T-loop with 2 stacked bulged bases | ||
| HL_6WDH_010 | T-loop with unstacked turn | ||
| HL_6WDH_012 | Pseudoknot geometry | ||
| HL_6WDH_015 | Mini UNCG with extended bulge | ||
| HL_6WDH_017 | No text annotation | ||
| HL_6WDH_019 | No text annotation | ||
| HL_6WDH_020 | GNRA wlth tandem sheared | ||
| HL_6WDH_022 | No text annotation | ||
| HL_6WDH_024 | No text annotation | ||
| HL_6WDH_027 | Externally structured | ||
| HL_6WDH_028 | GNRA wlth tandem sheared | ||
| HL_6WDH_029 | No text annotation | ||
| HL_6WDH_034 | No text annotation | ||
| HL_6WDH_036 | Pseudoknot geometry with 3' bulge | ||
| HL_6WDH_037 | UNCG | ||
| HL_6WDH_040 | GNRA | ||
| HL_6WDH_042 | No text annotation | ||
| HL_6WDH_043 | No text annotation | ||
| HL_6WDH_045 | GNRA related | ||
| HL_6WDH_046 | GNRA variation | ||
| HL_6WDH_047 | No text annotation | ||
| HL_6WDH_050 | No text annotation | ||
| HL_6WDH_052 | No text annotation | ||
| HL_6WDH_053 | No text annotation | ||
| HL_6WDH_054 | No text annotation | ||
| HL_6WDH_056 | GNRA | ||
| HL_6WDH_057 | GNRA | ||
| HL_6WDH_059 | No text annotation | ||
| HL_6WDH_060 | No text annotation | ||
| HL_6WDH_061 | No text annotation | ||
| HL_6WDH_063 | GNRA | ||
| HL_6WDH_065 | No text annotation | ||
| HL_6WDH_066 | UNCG variation | ||
| HL_6WDH_068 | GNRA | ||
| HL_6WDH_070 | Mini UNCG | ||
| HL_6WDH_072 | No text annotation | ||
| HL_6WDH_112 | GNRA with extra near cWW | ||
| HL_6WDH_073 | GNRA | ||
| HL_6WDH_074 | GNRA | ||
| HL_6WDH_075 | No text annotation | ||
| HL_6WDH_076 | GNRA related | ||
| HL_6WDH_077 | GNRA | ||
| HL_6WDH_078 | No text annotation | ||
| HL_6WDH_079 | UNCG | ||
| HL_6WDH_080 | GNRA | ||
| HL_6WDH_081 | UNCG | ||
| HL_6WDH_082 | GNRA wlth extra near cWW | ||
| HL_6WDH_084 | No text annotation | ||
| HL_6WDH_085 | No text annotation | ||
| HL_6WDH_086 | GNRA | ||
| HL_6WDH_088 | Externally structured | ||
| HL_6WDH_090 | GNRA | ||
| HL_6WDH_092 | GNRA | ||
| HL_6WDH_094 | T-loop related | ||
| HL_6WDH_095 | No text annotation | ||
| HL_6WDH_096 | GNRA | ||
| HL_6WDH_097 | GNRA | ||
| HL_6WDH_098 | T-loop with 3 stacked bulged bases | ||
| HL_6WDH_099 | No text annotation | ||
| HL_6WDH_100 | UNCG | ||
| HL_6WDH_102 | tRNA D-loop | ||
| HL_6WDH_103 | tRNA anticodon loop | ||
| HL_6WDH_104 | T-loop with 2 stacked bulged bases | ||
| HL_6WDH_105 | No text annotation | ||
| HL_6WDH_106 | tRNA anticodon loop | ||
| HL_6WDH_107 | T-loop with 2 stacked bulged bases | ||
| HL_6WDH_108 | tRNA D-loop | ||
| HL_6WDH_109 | tRNA anticodon loop | ||
| HL_6WDH_110 | T-loop with 2 stacked bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6WDH_001 | 1/1/24:30, 1/1/510:516 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_22311.1 | |
| IL_6WDH_012 | 1/1/536:539, 1/1/554:557 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_6WDH_013 | 1/1/564:566, 1/1/575:577 | Isolated non-canonical cWW pair | geometric IL_5TBW_016 NA | |
| IL_6WDH_014 | 1/1/606:610, 1/1/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_6WDH_015 | 1/1/672:674, 1/1/806:808 | Isolated non-canonical cWW pair | homologous IL_5J7L_259 NA | |
| IL_6WDH_017 | 1/1/697:698, 1/1/763:765 | Single bulged A | homologous IL_5J7L_261 NA | |
| IL_6WDH_021 | 1/1/775:777, 1/1/787:791 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_6WDH_022 | 1/1/837:838, 1/1/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_6WDH_026 | 1/1/856:862, 1/1/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 NA | |
| IL_6WDH_028 | 1/1/864:868, 1/1/909:912 | C-loop with bulged stacked A's | homologous IL_5J7L_272 NA | |
| IL_6WDH_029 | 1/1/870:872, 1/1/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
| IL_6WDH_033 | 1/1/998:1002, 1/1/1153:1157 | UAA/GAN | homologous IL_5J7L_277 NA | |
| IL_6WDH_036 | 1/1/1018:1024, 1/1/1140:1144 | Kink-turn related | geometric IL_5J7L_280 NA | |
| IL_6WDH_037 | 1/1/1024:1030, 1/1/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_6WDH_045 | 1/1/1208:1215, 1/1/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_6WDH_046 | 1/1/1262:1269, 1/1/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_6WDH_049 | 1/1/1351:1355, 1/1/1376:1380 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_6WDH_050 | 1/1/1357:1361, 1/1/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_6WDH_054 | 1/1/1437:1440, 1/1/1551:1555 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_6WDH_055 | 1/1/1468:1471, 1/1/1520:1524 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_6WDH_191 | 1/1/1526:1529, 1/1/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 NA | |
| IL_6WDH_060 | 1/1/1651:1656, 1/1/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_6WDH_061 | 1/1/1663:1665, 1/1/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 NA | |
| IL_6WDH_062 | 1/1/1666:1669, 1/1/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_6WDH_182 | 1/1/1666:1674, 1/1/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_6WDH_063 | 1/1/1669:1674, 1/1/1990:1993 | Intercalated tWH | geometric IL_7A0S_062 IL_28217.1 | |
| IL_6WDH_064 | 1/1/1686:1691, 1/1/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_6WDH_067 | 1/1/1770:1771, 1/1/1980:1982 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_6WDH_068 | 1/1/1798:1804, 1/1/1813:1821 | Kink-turn related | homologous IL_5J7L_313 NA | |
| IL_6WDH_074 | 1/1/1934:1945, 1/1/1961:1964 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_6WDH_076 | 1/1/2054:2056, 1/1/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_6WDH_077 | 1/1/2067:2069, 1/1/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_6WDH_079 | 1/1/2081:2083, 1/1/2236:2239 | Isolated tHS basepair with bulges | homologous IL_4WF9_082 IL_87316.1 | |
| IL_6WDH_083 | 1/1/2202:2204, 1/1/2220:2221 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_6WDH_084 | 1/1/2350:2353, 1/1/2364:2367 | Double sheared | homologous IL_4WF9_087 IL_58355.2 | |
| IL_6WDH_087 | 1/1/2454:2455, 1/1/2496:2498 | Major groove platform | geometric IL_4WF9_090 IL_48076.8 | |
| IL_6WDH_088 | 1/1/2457:2459, 1/1/2493:2494 | Major groove platform | homologous IL_7A0S_085 IL_48076.8 | |
| IL_6WDH_089 | 1/1/2459:2461, 1/1/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_6WDH_090 | 1/1/2466:2470, 1/1/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_6WDH_092 | 1/1/2510:2512, 1/1/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_6WDH_093 | 1/1/2512:2513, 1/1/2571:2574 | No text annotation | homologous IL_4WF9_096 IL_44609.2 | |
| IL_6WDH_096 | 1/1/2636:2640, 1/1/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_6WDH_098 | 1/1/2680:2684, 1/1/2725:2727 | C-loop | homologous IL_7A0S_095 IL_63596.12 | |
| IL_6WDH_185 | 1/1/2687:2691, 1/1/2718:2722 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_6WDH_100 | 1/1/2695:2696, 1/1/2711:2714 | Multiple bulged bases | homologous IL_4WF9_103 IL_44609.2 | |
| IL_6WDH_113 | 1/3/47:52, 1/3/359:361 | No text annotation | geometric IL_5J7L_003 NA | |
| IL_6WDH_136 | 1/3/569:575, 1/3/880:881 | No text annotation | homologous IL_6CZR_134 NA | |
| IL_6WDH_147 | 1/3/779:783, 1/3/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_6WDH_148 | 1/3/887:894, 1/3/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_6WDH_149 | 1/3/922:923, 1/3/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_6WDH_158 | 1/3/1057:1058, 1/3/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_6WDH_159 | 1/3/1060:1061, 1/3/1195:1197 | Single bulged A | geometric IL_5J7L_049 NA | |
| IL_6WDH_160 | 1/3/1061:1063, 1/3/1193:1195 | Isolated non-canonical cWW pair | homologous IL_5J7L_050 NA | |
| IL_6WDH_167 | 1/3/1303:1308, 1/3/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_57885.2 | |
| IL_6WDH_168 | 1/3/1399:1401, 1/3/1501:1504 | No text annotation | geometric IL_4V88_463 NA | |
| IL_6WDH_170 | 1/3/1405:1407, 1/3/1494:1496 | Isolated non-canonical cWW pair | geometric IL_2O3Y_001 IL_71625.2 | |
| IL_6WDH_171 | 1/3/1407:1409, 1/3/1491:1494 | No text annotation | geometric IL_8UO6_002 IL_53541.1 | |
| IL_6WDH_173 | 1/3/1416:1419, 1/3/1481:1484 | Double sheared | homologous IL_6CZR_169 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6WDH_002 | Single bulged A | ||
| IL_6WDH_003 | Minor groove platform | ||
| IL_6WDH_004 | Kink-turn | ||
| IL_6WDH_005 | Single stack bend | ||
| IL_6WDH_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_6WDH_007 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_6WDH_008 | No text annotation | ||
| IL_6WDH_189 | No text annotation | ||
| IL_6WDH_009 | No text annotation | ||
| IL_6WDH_010 | No text annotation | ||
| IL_6WDH_011 | No text annotation | ||
| IL_6WDH_016 | tHW-tHW cross-strand stack | ||
| IL_6WDH_018 | Single bulged G | ||
| IL_6WDH_019 | Triple sheared | ||
| IL_6WDH_020 | Major groove platform | ||
| IL_6WDH_023 | 90 degree turn | ||
| IL_6WDH_177 | No text annotation | ||
| IL_6WDH_024 | Stack outside cWW | ||
| IL_6WDH_025 | Single stack bend | ||
| IL_6WDH_027 | Single bulged G | ||
| IL_6WDH_030 | Double sheared with non-canonical cWW | ||
| IL_6WDH_031 | No text annotation | ||
| IL_6WDH_178 | Isolated cWS basepair | ||
| IL_6WDH_032 | Single bulged C | ||
| IL_6WDH_034 | SSU/LSU pseudoknot | ||
| IL_6WDH_035 | Single bulged U | ||
| IL_6WDH_038 | Isolated non-canonical cWW pair | ||
| IL_6WDH_039 | Tandem non-canonical cWW pairs | ||
| IL_6WDH_040 | Kink-turn | ||
| IL_6WDH_041 | No text annotation | ||
| IL_6WDH_190 | Major groove platform | ||
| IL_6WDH_042 | No text annotation | ||
| IL_6WDH_043 | Isolated cWS basepair | ||
| IL_6WDH_044 | No text annotation | ||
| IL_6WDH_047 | Major groove platform; stack outside cWW | ||
| IL_6WDH_048 | C-loop | ||
| IL_6WDH_051 | No text annotation | ||
| IL_6WDH_052 | UAA/GAN | ||
| IL_6WDH_053 | Tandem non-canonical cWW pairs | ||
| IL_6WDH_056 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_6WDH_179 | tSH-tHW-tHS | ||
| IL_6WDH_057 | No text annotation | ||
| IL_6WDH_180 | 180 degree turn | ||
| IL_6WDH_058 | Single bulged A | ||
| IL_6WDH_059 | Triple sheared related | ||
| IL_6WDH_181 | No text annotation | ||
| IL_6WDH_065 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_6WDH_066 | Triple sheared | ||
| IL_6WDH_069 | Minor groove platform, major groove intercalation | ||
| IL_6WDH_070 | Major groove intercalation | ||
| IL_6WDH_071 | Major groove minor groove platform; mini C-loop | ||
| IL_6WDH_183 | No text annotation | ||
| IL_6WDH_072 | UAA/GAN related | ||
| IL_6WDH_073 | Bulged stacked bases | ||
| IL_6WDH_075 | Major groove platform | ||
| IL_6WDH_078 | Minor groove platform | ||
| IL_6WDH_080 | Isolated non-canonical cWW pair | ||
| IL_6WDH_081 | Tandem non-canonical cWW pairs | ||
| IL_6WDH_192 | Isolated non-canonical cWW pair | ||
| IL_6WDH_082 | No text annotation | ||
| IL_6WDH_184 | No text annotation | ||
| IL_6WDH_085 | No text annotation | ||
| IL_6WDH_086 | Single stack bend | ||
| IL_6WDH_091 | Major groove platform | ||
| IL_6WDH_094 | Major groove platform with intercalation | ||
| IL_6WDH_095 | Single bulged A | ||
| IL_6WDH_097 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_6WDH_099 | No text annotation | ||
| IL_6WDH_101 | UAA/GAN with extra cWW | ||
| IL_6WDH_102 | No text annotation | ||
| IL_6WDH_103 | Major groove intercalation | ||
| IL_6WDH_104 | Multiple bulged bases with non-canonical cWW | ||
| IL_6WDH_105 | tHS double platform | ||
| IL_6WDH_106 | Major groove intercalation | ||
| IL_6WDH_107 | No text annotation | ||
| IL_6WDH_108 | Major groove minor groove platform; mini C-loop | ||
| IL_6WDH_109 | Symmetric double minor groove platform | ||
| IL_6WDH_110 | Bacterial 5S Loop E | ||
| IL_6WDH_111 | Single bulged G | ||
| IL_6WDH_112 | Single bulged A | ||
| IL_6WDH_114 | Minor groove platform | ||
| IL_6WDH_115 | Multiple bulged bases | ||
| IL_6WDH_116 | Minor groove platform with extra cWW | ||
| IL_6WDH_117 | Minor groove platform | ||
| IL_6WDH_193 | Single bulged G | ||
| IL_6WDH_118 | No text annotation | ||
| IL_6WDH_119 | Isolated non-canonical cWW pair | ||
| IL_6WDH_120 | Minor groove platform related | ||
| IL_6WDH_121 | Isolated cWH basepair | ||
| IL_6WDH_122 | tWH-tWH-tHW-tHW | ||
| IL_6WDH_123 | Minor groove platform | ||
| IL_6WDH_124 | Kink-turn with non-sequential stacking | ||
| IL_6WDH_125 | No text annotation | ||
| IL_6WDH_186 | No text annotation | ||
| IL_6WDH_126 | C-loop | ||
| IL_6WDH_127 | Single bulged U | ||
| IL_6WDH_128 | C-loop | ||
| IL_6WDH_129 | Single bulged G | ||
| IL_6WDH_130 | No text annotation | ||
| IL_6WDH_131 | No text annotation | ||
| IL_6WDH_132 | tSH-tHW-tWW | ||
| IL_6WDH_133 | No text annotation | ||
| IL_6WDH_134 | SSU/LSU pseudoknot | ||
| IL_6WDH_135 | Kink-turn related | ||
| IL_6WDH_137 | tSH-tHW-tHS | ||
| IL_6WDH_138 | Major groove platform | ||
| IL_6WDH_139 | Major groove minor groove platform; mini C-loop | ||
| IL_6WDH_140 | No text annotation | ||
| IL_6WDH_141 | Major groove platform; stack outside cWW | ||
| IL_6WDH_142 | Single stack bend | ||
| IL_6WDH_143 | Tandem non-canonical cWW pairs | ||
| IL_6WDH_194 | Triple non-canonical cWW pairs | ||
| IL_6WDH_144 | No text annotation | ||
| IL_6WDH_145 | Kink-turn | ||
| IL_6WDH_146 | Left turn | ||
| IL_6WDH_150 | Single bulged G | ||
| IL_6WDH_151 | Minor groove platform | ||
| IL_6WDH_152 | No text annotation | ||
| IL_6WDH_153 | Minor groove platform | ||
| IL_6WDH_154 | Single stack bend | ||
| IL_6WDH_155 | No text annotation | ||
| IL_6WDH_156 | Single bulged U | ||
| IL_6WDH_157 | Tandem non-canonical cWW pairs | ||
| IL_6WDH_187 | No text annotation | ||
| IL_6WDH_161 | No text annotation | ||
| IL_6WDH_162 | Minor groove platform | ||
| IL_6WDH_163 | No text annotation | ||
| IL_6WDH_164 | No text annotation | ||
| IL_6WDH_188 | No text annotation | ||
| IL_6WDH_165 | 180 degree turn | ||
| IL_6WDH_166 | Double sheared with non-canonical cWW | ||
| IL_6WDH_169 | No text annotation | ||
| IL_6WDH_172 | Isolated non-canonical cWW pair | ||
| IL_6WDH_174 | Triple sheared related | ||
| IL_6WDH_175 | Single bulged A | ||
| IL_6WDH_176 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6WDH_001 | 1/1/30:31, 1/1/474:481, 1/1/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6WDH_027 | 1/1/30:31, 1/1/474:484, 1/1/496:510 | No text annotation | homologous J3_5J7L_066 NA | |
| J3_6WDH_028 | 1/1/32:35, 1/1/445:461, 1/1/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_6WDH_002 | 1/1/56:57, 1/1/70:76, 1/1/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_6WDH_036 | 1/1/297:301, 1/1/316:325, 1/1/337:341 | No text annotation | homologous J3_5J7L_068 NA | |
| J3_6WDH_003 | 1/1/683:689, 1/1/773:775, 1/1/791:794 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_6WDH_004 | 1/1/698:700, 1/1/732:736, 1/1/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_6WDH_006 | 1/1/1298:1303, 1/1/1625:1627, 1/1/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_6WDH_007 | 1/1/1306:1309, 1/1/1605:1611, 1/1/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_6WDH_008 | 1/1/1344:1349, 1/1/1382:1385, 1/1/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_6WDH_030 | 1/1/1424:1429, 1/1/1564:1565, 1/1/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_6WDH_031 | 1/1/2282:2284, 1/1/2384:2395, 1/1/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_6WDH_011 | 1/1/2517:2520, 1/1/2545:2547, 1/1/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_6WDH_013 | 1/1/2812:2815, 1/1/2831:2836, 1/1/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_6WDH_015 | 1/3/46:47, 1/3/361:367, 1/3/393:395 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_6WDH_032 | 1/3/46:52, 1/3/359:367, 1/3/393:395 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_6WDH_018 | 1/3/826:829, 1/3/857:861, 1/3/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_6WDH_021 | 1/3/955:962, 1/3/973:984, 1/3/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_6WDH_023 | 1/3/1063:1068, 1/3/1107:1113, 1/3/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J4_6WDH_001 | 1/1/268:269, 1/1/370:375, 1/1/399:406, 1/1/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_6WDH_002 | 1/1/601:604, 1/1/624:628, 1/1/635:638, 1/1/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_6WDH_003 | 1/1/1270:1276, 1/1/1294:1295, 1/1/1645:1648, 1/1/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_6WDH_004 | 1/1/1310:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_6WDH_005 | 1/1/1313:1314, 1/1/1338:1343, 1/1/1404:1405, 1/1/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_6WDH_006 | 1/1/1444:1445, 1/1/1466:1467, 1/1/1525:1526, 1/1/1546:1547 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_6WDH_007 | 1/1/1772:1776, 1/1/1788:1792, 1/1/1827:1830, 1/1/1975:1979 | No text annotation | homologous J4_4WF9_007 J4_61477.6 | |
| J4_6WDH_008 | 1/1/1833:1835, 1/1/1905:1906, 1/1/1924:1933, 1/1/1967:1972 | No text annotation | homologous J4_5J7L_026 NA | |
| J4_6WDH_011 | 1/3/115:122, 1/3/239:240, 1/3/286:289, 1/3/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_6WDH_017 | 1/3/142:144, 1/3/178:184, 1/3/193:198, 1/3/219:221 | No text annotation | homologous J4_5J7L_002 NA | |
| J4_6WDH_013 | 1/3/575:577, 1/3/764:769, 1/3/810:821, 1/3/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J5_6WDH_001 | 1/1/47:54, 1/1/116:121, 1/1/130:131, 1/1/148:150, 1/1/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_6WDH_002 | 1/1/531:533, 1/1/560:564, 1/1/577:579, 1/1/1261:1262, 1/1/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_6WDH_003 | 1/1/584:589, 1/1/668:671, 1/1/809:812, 1/1/1195:1196, 1/1/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_6WDH_004 | 1/1/1674:1682, 1/1/1706:1707, 1/1/1751:1752, 1/1/1756:1764, 1/1/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_6WDH_005 | 1/1/2057:2064, 1/1/2446:2453, 1/1/2500:2507, 1/1/2582:2588, 1/1/2606:2611 | No text annotation | ||
| J5_6WDH_006 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2282, 1/1/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J6_6WDH_001 | 1/1/45:46, 1/1/179:183, 1/1/214:224, 1/1/231:235, 1/1/262:266, 1/1/426:433 | No text annotation | ||
| J6_6WDH_002 | 1/1/2074:2077, 1/1/2243:2246, 1/1/2258:2259, 1/1/2281:2284, 1/1/2384:2395, 1/1/2421:2435 | No text annotation | ||
| J7_6WDH_001 | 1/1/8:15, 1/1/525:531, 1/1/2018:2023, 1/1/2040:2043, 1/1/2625:2630, 1/1/2788:2789, 1/1/2894:2895 | No text annotation | ||
| J7_6WDH_002 | 1/1/817:822, 1/1/835:837, 1/1/942:946, 1/1/971:976, 1/1/987:991, 1/1/1163:1164, 1/1/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6WDH_029 | No text annotation | ||
| J3_6WDH_005 | No text annotation | ||
| J3_6WDH_009 | Kink-turn 3-way junction | ||
| J3_6WDH_010 | No text annotation | ||
| J3_6WDH_037 | No text annotation | ||
| J3_6WDH_012 | No text annotation | ||
| J3_6WDH_014 | No text annotation | ||
| J3_6WDH_016 | No text annotation | ||
| J3_6WDH_033 | No text annotation | ||
| J3_6WDH_017 | No text annotation | ||
| J3_6WDH_019 | No text annotation | ||
| J3_6WDH_020 | No text annotation | ||
| J3_6WDH_022 | No text annotation | ||
| J3_6WDH_034 | No text annotation | ||
| J3_6WDH_038 | No text annotation | ||
| J3_6WDH_024 | No text annotation | ||
| J3_6WDH_025 | No text annotation | ||
| J3_6WDH_035 | No text annotation | ||
| J3_6WDH_026 | No text annotation | ||
| J4_6WDH_009 | No text annotation | ||
| J4_6WDH_010 | No text annotation | ||
| J4_6WDH_012 | No text annotation | ||
| J4_6WDH_014 | tRNA junction | ||
| J4_6WDH_015 | tRNA junction | ||
| J4_6WDH_016 | No text annotation | ||
| J5_6WDH_007 | No text annotation | ||
| J5_6WDH_008 | No text annotation | ||
| J5_6WDH_009 | No text annotation |
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