HL_6WDH_065

3D structure

PDB id

6WDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6WDH|1|1|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDH_065 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1519

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6WDH|1|1|C|2745
6WDH|1|1|U|2746
6WDH|1|1|G|2747
6WDH|1|1|A|2748
6WDH|1|1|A|2749
6WDH|1|1|A|2750
6WDH|1|1|G|2751
6WDH|1|1|C|2752
6WDH|1|1|A|2753
6WDH|1|1|U|2754
6WDH|1|1|C|2755
6WDH|1|1|U|2756
6WDH|1|1|A|2757
6WDH|1|1|A|2758
6WDH|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6