HL_6WDJ_010
3D structure
- PDB id
- 6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUGACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 6WDJ|1|1|G|329, 6WDJ|1|1|A|330, 6WDJ|1|1|C|331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WDJ_010 not in the Motif Atlas
- Homologous match to HL_5J7L_144
- Geometric discrepancy: 0.1756
- The information below is about HL_5J7L_144
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
6WDJ|1|1|G|327
6WDJ|1|1|U|328
6WDJ|1|1|G|329
6WDJ|1|1|A|330
6WDJ|1|1|C|331
6WDJ|1|1|A|332
6WDJ|1|1|G|333
6WDJ|1|1|C|334
6WDJ|1|1|C|335
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L4
- Chain u
- 50S ribosomal protein L24
Coloring options: